Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq322 107 1e-18 seq1740 98.7 7e-16 seq933 98.7 7e-16 seq37 98.7 7e-16 seq1642 95.1 9e-15 seq1039 84.2 2e-11 seq23 82.4 5e-11 >seq322 Length=397916 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| || || || || ||||| ||||| |||| || | Sbjct 312302 AATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTGGAGGTTGAGAGTTC 312243 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | || || ||| ||||||||||| | ||| | | || Sbjct 312242 AGATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAAGAGGGAATCCCTCCAGATCA 312183 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| ||||||||||| || ||||| || || ||| || ||| | || |||||||| Sbjct 312182 GCAGAGGCTTATCTTTGCAGGGAAACAGCTTGAGGATGGAAGAACCCTAGCTGATTACAA 312123 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||||||||| |||||| ||||| | | || |||| ||| Sbjct 312122 CATACAGAAGGAATCTACCCTTCATTTGGTACTTAGATTGAGAGGTGGA 312074 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| ||||| |||| || || || || |||||||| ||| | || ||| || | Sbjct 312757 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 312698 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || || |||||||| | ||| | || Sbjct 312697 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 312638 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||| || || ||||| || ||| || ||| | || |||||||| Sbjct 312637 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 312578 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || |||||||||||||| |||||| |||| Sbjct 312577 ATCCAGAAGGAATCTACCCTTCATTTGGT 312549 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| || || || || ||||| ||||| | || || | Sbjct 312074 AATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTAGAGGTTGAGAGTTC 312015 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | || || ||| ||||| |||||| | ||| | | || Sbjct 312014 AGATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGTATCCCTCCAGATCA 311955 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| |||||||||||||| || ||||| || ||| || ||| | || ||||| || Sbjct 311954 GCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTGCTGATTATAA 311895 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| ||||| ||| |||| || ||| | || || || Sbjct 311894 CATCCAAAAGGAATCCACTCTCCATTTGGTTTTGCGTCTTCGTGGGGG 311847 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 21912 AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCT 21971 ||||||||| || |||||||||||| | ||| | |||| ||||| || || ||||| Sbjct 333330 AAGCAAAAA-TTCAGGATAAAGAGGGTATTCCTCTGGACCAGCAGAGGCTAATTTTTGCC 333272 Query 21972 GGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 22031 ||||| || | |||||| ||| |||| ||||| ||||| ||||||||||||||| Sbjct 333271 GGCAAGCAGTTGGAAGATGGTTGTACTCTGGCTGATTATAATATCCAGAAGGAATCTACT 333212 Query 22032 CTTCATATGGTATT 22045 || || |||| || Sbjct 333211 CTCCACCTGGTTTT 333198 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| || || | ||| | | || ||||| ||||||||||| || |||||||| || Sbjct 312436 GATAAGGAAGGAATCCCTCCAGATCAGCAGAGGCTTATCTTTGCAGGGAAACAACTTGAG 312377 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| || ||| | || |||||||| || |||||||||||||| |||||| |||| Sbjct 312376 GATGGAAGAACCCTAGCAGATTACAACATACAGAAGGAATCTACCCTTCATTTGGT 312321 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| ||||| |||| || || || ||||||| || ||| | || ||| || || Sbjct 333866 ATGCAGATATTCGTTAAGACCTTGACTGGCAAAATTATCACCCTTGAGGTTGAATCCTCA 333807 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || || |||||||| | ||| | || Sbjct 333806 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 333747 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | ||||||||||| || || ||||| || ||| || ||| | || |||||||| Sbjct 333746 CAGTGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 333687 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || |||||||||||||| |||||| |||| Sbjct 333686 ATCCAGAAGGAATCTACCCTTCATTTGGT 333658 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| ||||| | || | | || ||||| ||||||||||| || |||||||| || Sbjct 333544 GATAAGGAGGGAATCCCCCCAGATCAGCAGAGGCTTATCTTTGCAGGGAAACAACTTGAG 333485 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || ||| | || ||||| || || || |||||||| ||||| ||| |||| || Sbjct 333484 GATGGAAGAACCCTTGCTGATTATAACATCCAAAAGGAATCCACTCTCCATTTGGTTTTG 333425 Query 22047 CGT 22049 ||| Sbjct 333424 CGT 333422 >seq1740 Length=56962 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || ||||| || || ||||||||||| | || ||| | || Sbjct 42769 ATGCAAATCTTTGTGAAGACATTGACAGGTAAAACCATTACTATTGAGGTGGAGAGCTCA 42710 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | |||| ||| || || || ||||||||| | ||| | |||| Sbjct 42709 GACACAATTGACAATCTGAAGGCTAAGATACAGGACAAAGAGGGTATCCCTCCAGACCAG 42650 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || || |||||||| || || || |||||| | |||| | | ||||| || Sbjct 42649 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGATGATTATAAC 42590 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || || |||||||| | || || ||| | || || || Sbjct 42589 ATCCAGAAAGAGTCAACTCTTCACCTTGTCTTGCGTCTTCGTGGTGG 42543 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || || || ||||||||| | || ||| || Sbjct 42313 ATGCAAATCTTTGTGAAGACCTTGACTGGAAAGACCATTACCTTAGAGGTAGAAAGTTCA 42254 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||| || || ||||| | || | | || Sbjct 42253 GACACAATTGATAATGTCAAGGCCAAAATACAGGACAAGGAGGGAATCCCACCAGATCAG 42194 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || ||| | || ||| || ||| | || || ||||| Sbjct 42193 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAAC 42134 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAAT 22068 ||||||||||| |||||||||||| | || || || | || || |||| ||||| Sbjct 42133 ATTCAGAAGGAGTCTACTCTTCATCTTGTTTTGCGCCTTCGTGGTGGATTTTAAT 42079 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || |||||||| ||||| |||| || | || Sbjct 43225 ATGCAGATTTTTGTGAAGACCCTTACAGGCAAAACAATTACTTTGGAGGTTGAGAGCTCA 43166 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || || |||||| | ||| | |||| Sbjct 43165 GACACAATTGACAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATCCCTCCAGACCAG 43106 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || || ||||| || ||||| | |||||| ||| ||||||||||||| Sbjct 43105 CAGAGGCTCATTTTTGCCGGAAAACAGTTGGAAGATGGCCGAACCTTGGCCGATTACAAC 43046 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 || ||||||||||| || |||||| | || | ||||| Sbjct 43045 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTT 43008 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||||| || || || ||||| ||| ||||| ||| || Sbjct 22349 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACCATCACCTTGGAAGTAGAAAGTTCA 22408 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| || || || || | || | | || Sbjct 22409 GACACAATTGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGAATCCCACCAGATCAG 22468 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || ||| | || ||| || ||| | || || ||||| Sbjct 22469 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAAC 22528 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAA 22067 ||||||||||| || |||||||| | || || || | || || |||| |||| Sbjct 22529 ATTCAGAAGGAGTCCACTCTTCACCTTGTGTTGCGCCTTCGTGGTGGATTTTAA 22582 >seq933 Length=173040 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| ||||| |||| || || || || |||||||| ||| | || ||| || | Sbjct 29241 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 29300 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || || |||||||| | ||| | || Sbjct 29301 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 29360 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||| || || ||||| || ||| || ||| | || |||||||| Sbjct 29361 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 29420 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || |||||||||||||| |||||| |||| Sbjct 29421 ATCCAGAAGGAATCTACCCTTCATTTGGT 29449 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || || || ||||| || |||| || | Sbjct 29925 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACATTGGAGGTTGAGAGTTCC 29984 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||||||| |||||||||||| | ||| | |||| Sbjct 29985 GATACAATTGACAATGTGAAGGCAAAAATTCAGGATAAAGAGGGTATTCCTCCAGACCAG 30044 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || || ||||| || || || | |||||| ||| |||| ||||| ||| Sbjct 30045 CAGAGGCTAATTTTTGCCGGGAAGCAGTTGGAAGATGGTCGTACTCTGGCTGATTATAAT 30104 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || ||||||||||||||| | || |||| || Sbjct 30105 ATCCAGAAGGAATCTACTTTGCACTTGGTTTT 30136 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| || ||| | ||| | || ||||| ||||||||||| || || ||||| || Sbjct 29562 GATAAGGAAGGTATCCCTCCCGATCAGCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAG 29621 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| || ||| | || |||||||| || |||||||||||||| |||||| |||| Sbjct 29622 GATGGAAGAACCCTAGCTGATTACAACATCCAGAAGGAATCTACCCTTCATTTGGT 29677 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || || | || || || || |||||| |||| |||| | | Sbjct 30153 ATGCAAATATTTGTGAAGACCCTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 30212 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||| ||| ||||| |||||| | || | |||| Sbjct 30213 GATACAATCGATAATGTGAAAGCAAAGATTCAAGATAAGGAGGGTATTCCCCCAGACCAG 30272 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||| ||||| || || || | || ||| ||| |||| ||||||||| Sbjct 30273 CAGAGGCTTATTTTTGCCGGTAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACAAT 30332 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||| |||||||| || || Sbjct 30333 ATTCAGAAAGAATCTACCCTCCA 30355 >seq37 Length=1182629 Score = 98.7 bits (108), Expect = 7e-16 Identities = 154/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || || || || || || ||||| ||| |||| |||| | || Sbjct 292168 ATGCAAATATTTGTGAAGACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAAAGCTCA 292109 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || || ||||| |||||| | || | | || Sbjct 292108 GACACCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCCCCCAGATCAG 292049 Query 21954 CAGAGACTTATCTTTGCTGG-CAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||||||||| ||||| | |||||| || || | || |||||||| Sbjct 292048 CAGAGGTTGATCTTTGCTGGATAAACAGTTGGAAGATGGAAGGACCCTTGCGGATTACAA 291989 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 ||| |||||||| ||||| |||||| | || | ||||| Sbjct 291988 TATCCAGAAGGAGTCTACCCTTCATCTTGTGCTGCGTTT 291950 >seq1642 Length=65368 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || || || ||||||||| | || ||| || Sbjct 33995 ATGCAAATCTTTGTGAAGACGTTGACTGGAAAGACCATTACCTTAGAGGTAGAAAGTTCA 34054 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| || || ||||| | || | | ||| Sbjct 34055 GACACCATAGATAATGTGAAGGCAAAAATACAGGACAAGGAGGGAATCCCGCCAGATCAA 34114 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || ||| | || ||| || ||| | || || ||||| Sbjct 34115 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAAC 34174 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAAT 22068 ||||||||||| ||||||||||| | || || || | || || |||| ||||| Sbjct 34175 ATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCGCCTTCGTGGTGGATTTTAAT 34229 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || |||| || | || ||||| ||||| || | ||| || || Sbjct 53934 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCA 53993 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || ||| || ||||| || | || | ||||| Sbjct 53994 GATACCATAGACAATGTTAAGGCCAAGATTCAGGACAAAGAAGGCATTCCACCAGACCAA 54053 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| ||||| || || ||| ||| | || |||||||| Sbjct 54054 CAGAGGCTCATCTTTGCTGGAAAACAGCTTGAGGATGGTCGGACTTTAGCTGATTACAAC 54113 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || ||||| || ||| |||| | ||| | || || || Sbjct 54114 ATTCAGAAAGAGTCTACCCTCCATTTGGTGCTCCGTCTCCGTGGTGG 54160 >seq1039 Length=240209 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || || |||||||| |||| ||| || Sbjct 128846 ATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATTACATTGGAGGTAGAAAGTTCA 128787 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| |||||| || || ||||| | || | | || Sbjct 128786 GATACGATCGATAATGTCAAGGCAAAAATACAAGACAAGGAGGGAATCCCACCAGATCAG 128727 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || ||| | || ||| || || | || || ||||| Sbjct 128726 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAAC 128667 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAA 22067 ||||||||||| ||||||||||| | || || || | || || |||| |||| Sbjct 128666 ATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCGCCTTCGTGGTGGATGTTAA 128613 >seq23 Length=202804 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/207 (69%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||| |||| || |||||||| || | ||| ||| | || Sbjct 5488 ATGCAAATCTTCGTCAAAACCCTAACCGGAAAAACCATCACACTCGAAGTCGAATCATCA 5547 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | | | ||| || ||| ||||| || || | ||||| | Sbjct 5548 GACACAATCGACAACGTGAAGGCGAAGATTCAAGATAAGGAAGGGATTCCACCTGATCAG 5607 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 |||| || | ||||||||||| ||||| || || ||| || ||| | || ||||| Sbjct 5608 CAAC---GATTGATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTAT 5664 Query 22011 AATATTCAGAAGGAATCTACTCTTCAT 22037 ||||||||||| |||||||| |||||| Sbjct 5665 AATATTCAGAAAGAATCTACACTTCAT 5691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358005103948096