Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1210 93.3 8e-14 seq520 89.7 1e-12 >seq1210 Length=122563 Score = 93.3 bits (102), Expect = 8e-14 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||| ||||| || |||||||| ||| ||||| || || || |||||| Sbjct 42409 CTTGCCTTCTTTGCCGCTTCCGACGGCATCGTCTTGGAGAATCTTGCAGGAAGATTCATG 42468 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 ||||| || || || |||||||| ||| |||||||| |||||||| || || ||||| Sbjct 42469 AAAGAAGTTCAAGTCTCAGAGGCGCG-TGCTTTCTACGGATTCCAGATCGCAATCGAGAA 42527 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | || ||||| |||| || | | || || ||| ||| | || ||| Sbjct 42528 TATTCATTCTGAAATGTATAGTCTCTTGATTGAGACTTATATCAATGATTCAGTTGAGAA 42587 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || | |||| | || || || ||||| || || || | ||||| || || ||||| Sbjct 42588 GAATCGTTTGTTTCATGCAATTGAAACGATTCCTTGTATTACAAAGAAAGCTGATTGGGC 42647 Query 42662 GCTCAACTGGATCGA 42676 | || |||||||| Sbjct 42648 TATGAAATGGATCGA 42662 >seq520 Length=294854 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || ||||| |||||||| ||||| |||||| ||||| || ||| || |||||| Sbjct 262520 CTTGCTTTCTTTGCCGCCTCCGACGGTATAGTCTTGGAGAATCTTGCCGGAAGATTCATG 262461 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 ||||| || || || |||||| || ||| ||||| |||||||| || || || ||| Sbjct 262460 AAAGAAGTTCAAGTCTCTGAGGCACGTGCCTTTTACGGTTTCCAGATCGCGATTGAAAAC 262401 Query 42543 GTGCACTCTGAGGTGTA 42559 | || ||||| |||| Sbjct 262400 ATTCATTCTGAAATGTA 262384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944015480522240