Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1436 104 2e-17 seq37 100 2e-16 >seq1436 Length=88924 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || ||| ||||| | |||||||||| ||| ||||| || || ||||| || Sbjct 38765 CCTCCACGCAACCGAAGCACTAAATGAAGCGTGGACTCTTTCTGGATATTATAATCCGCA 38824 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | | || ||||||||||| || ||||| |||| ||||||||||| || Sbjct 38825 AGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGG 38884 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | | ||||| ||| ||| || ||| | | | | || | ||||| | Sbjct 38885 ATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTGTCGATTGTGTCGGAGGATTCAACT 38944 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || |||||||| ||||| ||||| |||||||||||||| Sbjct 38945 TCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACAAAGATTTGCAT 38991 >seq37 Length=1182629 Score = 100 bits (110), Expect = 2e-16 Identities = 171/240 (71%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| || || || |||||||||||| ||||||||| ||||||||||| | Sbjct 292902 ACCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCAG- 292960 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| ||| | |||| ||||| ||||| ||||| || || || || ||||||||| | Sbjct 292961 CAAGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGATCCGGAG 293020 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCG 34077 | | | || |||||| | | || |||| | || | | |||| || || Sbjct 293021 GAATTCCTTCCTTGTCC-TGGATCTTGGCTTTGACGTTGTCGATGGTGTCAG-AGCTTTC 293078 Query 34078 CA-TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAATAT 34136 || || | || || || |||||||| || |||||||| ||||||||||| | ||| || Sbjct 293079 CACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATTTGCATCTGTAAAAT 293138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396929689834048