Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq426 167 6e-36 seq1436 165 2e-35 seq23 163 7e-35 seq78 143 6e-29 seq1039 132 1e-25 seq933 123 6e-23 seq322 123 6e-23 seq1740 114 3e-20 seq37 96.9 8e-15 seq1642 95.1 3e-14 >seq426 Length=522792 Score = 167 bits (184), Expect = 6e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| || ||| || |||||||| |||||||| Sbjct 162592 CCACCACGGAGACGGAGAACAAGGTGAAGAGTTGATTCCTTCTGGATATTGTAGTCGGCA 162651 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | ||||||||||||||||| || || |||||| ||| Sbjct 162652 AGAGTGCGGCCGTCTTCAAGCTGTTTTCCTGCGAAGATGAGTCGTTGTTGATCCGGTGGA 162711 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || |||||||| || || ||||| || || | ||| ||||| || Sbjct 162712 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGACGTTGTCGATGGTATCAGAAGATTCAACC 162771 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || |||||||| || || || || |||||||| |||||||| Sbjct 162772 TCGAGGGTTATCGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 162818 >seq1436 Length=88924 Score = 165 bits (182), Expect = 2e-35 Identities = 179/236 (76%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | || |||||||| | ||| |||||||||||| || || | Sbjct 7262 CATG-CCGCCACGGAGACGGAGAACGAGATGGAGTGTGGATTCTTTTTGGATGTTGTAAT 7320 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || ||||| |||||||| | ||||||||| |||||||| |||||||| || | Sbjct 7321 CGGCAAGAGTGCGGCCGTCTTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAG 7380 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| |||||||| || || |||||||| ||||| ||||| || || | || |||| Sbjct 7381 GTGGAATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCAGAGGATT 7440 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 |||| || || || || || || ||||| || || || || || |||||||| ||| Sbjct 7441 CTACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACAAAGATCTGCATGATG 7496 Score = 161 bits (178), Expect = 2e-34 Identities = 179/236 (76%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | || ||||| || | ||| |||||||||||| || || | Sbjct 38989 CATG-CCGCCACGGAGACGGAGGACGAGGTGGAGTGTGGATTCTTTTTGGATGTTGTAAT 39047 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || || || |||||||| | ||||||||| |||||||| ||||||||||| Sbjct 39048 CGGCAAGAGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTG 39107 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| |||||||| || || |||||||| ||||| ||||| || || | ||| |||| Sbjct 39108 GTGGAATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATT 39167 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 |||| || || || || || || ||||| || || || ||||| |||||||| ||| Sbjct 39168 CTACCTCTAGGGTTATGGTTTTGCCGGT-AGGGTTTTCACGAAGATCTGCATGATG 39222 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || | ||||| || | ||||| ||| ||||| ||||||||||| || || Sbjct 7037 TCCACCACGCAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCCGC 7096 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | || ||||| ||||| || ||||| ||||||| ||||| ||| | || Sbjct 7097 AAGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGG 7156 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||||||||||| || ||||| |||||||| || || | || ||||| || Sbjct 7157 AATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTGTCGATTGTGTCAGAGGATTCAAC 7216 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| ||||| || || || || || || |||||||| || ||||| Sbjct 7217 TTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACGAAGATTTGCAT 7264 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || | ||||| |||| ||||| ||||||||||| || || || || | || || Sbjct 38779 AAGCACTAAATGAAGCGTGGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCATC 38838 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 ||| ||||| || ||||| ||||||| ||||| ||| | ||||||||||||||||| Sbjct 38839 TTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGGATTCCTTCTTTATC 38898 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 ||| || ||||| |||||||| || || | ||| ||||| |||||||| ||||| || Sbjct 38899 CTGAATCTTCGCCTTCACGTTGTCGATTGTGTCGGAGGATTCAACTTCGAGTGTGATGGT 38958 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || ||||| Sbjct 38959 TTTTCCAGTTAGGGTTTTGACAAAGATTTGCAT 38991 Score = 129 bits (142), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || || || | || |||||| || |||||||| || || Sbjct 6810 CCACCACGGAGCCTGAGAACAAGGTGGAGTGTAGATTCTTTCTGAATATTATAATCAGCA 6869 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| || || | ||||| || || ||||||| ||||| ||| | ||| Sbjct 6870 AGAGTCCGTCCATCCTCAAGCTGTTTACCGGCAAAGATCAATCGCTGCTGATCAGGTGGA 6929 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 || || || || || || || ||||| |||||||| || |||| ||| ||| || Sbjct 6930 ATACCCTCCTTGTCTTGAATCTTCGCCTTCACGTTATCAATAGTATCAGAACTC---TCA 6986 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || |||||||||||||||| ||||| || || ||||||||| Sbjct 6987 ACCTCAAGAGTAATCGTCTTCCCGGTCAACGTCTTCACAAAAATCTGCATT 7037 >seq23 Length=202804 Score = 163 bits (180), Expect = 7e-35 Identities = 176/232 (76%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || |||||||| | || |||||||| | |||| |||||||||||| || || | Sbjct 5490 CATG-CCTCCGCGGAGACGGAGAACGAGATGGAGCGTGGATTCTTTTTGGATGTTGTAAT 5432 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || || || || ||||| | ||||||||| |||||||| ||||| |||||| Sbjct 5431 CGGCAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTG 5372 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| |||||||| || || || ||||| ||||| ||||| || || | ||| |||| Sbjct 5371 GTGGAATTCCTTCCTTGTCTTGAATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATT 5312 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| || || || || || || ||||| || || || ||||| || ||||| Sbjct 5311 CTACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATTTGCAT 5260 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||||||| || ||||||| || |||||| || |||||||| || || Sbjct 5714 CCACCACGGAGTCTAAGAACAAGATGAAGTGTAGATTCTTTCTGAATATTATAATCAGCA 5655 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| || || | ||||| || || ||||||| || || ||| | ||| Sbjct 5654 AGAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGTGGA 5595 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || || ||||| |||||||| || || | || ||||| ||| Sbjct 5594 ATCCCTTCCTTATCTTGAATCTTCGCCTTCACGTTGTCGATTGTGTCTGATGATTCGACT 5535 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || ||||| || || |||||||| || ||||| Sbjct 5534 TCGAGTGTGATGGTTTTTCCGGTTAGGGTTTTGACGAAGATTTGCAT 5488 >seq78 Length=963227 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| || ||| || ||||| || ||||||||| Sbjct 604632 CCACCACGAAGACGGAGAACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCG 604691 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || |||||||| || ||||| |||||||| ||||| || || | ||| Sbjct 604692 AGAGTGCGGCCATCTTCTAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGA 604751 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||||| || ||||| || || || || | || || || || Sbjct 604752 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATTGTGTCAGAAGACTCAACC 604811 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||||||||| || || || || ||||| |||||||| Sbjct 604812 TCGAGGGTTATCGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 604858 >seq1039 Length=240209 Score = 132 bits (146), Expect = 1e-25 Identities = 174/238 (73%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | |||| || ||||||||||| || || || Sbjct 129304 CCACCACGGAGACGGAGCACCAAATGGAGCGTGGACTCCTTTTGGATATTGTAATCAGCA 129363 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || ||||| || || ||||||||||| || |||| Sbjct 129364 AGGGTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGG 129423 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT--A 288424 || ||||| ||||| || || || || || || || ||||| | || || | ||| | Sbjct 129424 ATCCCTTCCTTATCTTGAATCTTGGCCTTAACATTGTCTATGGTAT--CTGAACTCTCAA 129481 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT-TATGTTAT 288481 ||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| ||| |||| Sbjct 129482 CTTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCATCTATATTAT 129539 Score = 96.9 bits (106), Expect = 8e-15 Identities = 141/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| ||||| || || || || | || ||||| | |||||||| || || Sbjct 129112 TCTTTCTGGATGTTATAATCAGCCAGGGTTCTGCCATCTTCGAGCTGTTTTCCCGCAAAA 129171 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| ||| |||||| || ||||||||||| || || || || || || Sbjct 129172 ATCAACCTCTGCTGA---TCTGGGGGAATACCTTCTTTATCTTGTATCTTGGCCTTGACA 129228 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || ||||| | || ||| ||||| || || ||||| ||||| || || || ||| Sbjct 129229 TTGTCTATGGTGTCAGAACTC---TCTACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTC 129285 Query 288457 TTGACGAATATCTGCAT 288473 || || || |||||||| Sbjct 129286 TTAACAAAGATCTGCAT 129302 >seq933 Length=173040 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | |||||| || | ||||| || ||| || ||||| || || || || Sbjct 29468 TCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGC 29409 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| || || | ||| || ||||| ||||| || | ||| ||| | || Sbjct 29408 TAGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGG 29349 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || ||||| |||||||| || || || || || || || | |||| ||||| || Sbjct 29348 GATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATTGTATCGGAGGATTCAAC 29289 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || |||| ||||| |||||||||||||| Sbjct 29288 CTCAAGGGTGATGGTTTTTCCAGTCAAGGTCTTAACGAATATCTGCAT 29241 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/198 (70%), Gaps = 12/198 (6%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||||||||| || || || || || || ||||| || || || || || || Sbjct 30116 TTCCTTCTGGATATTATAATCAGCCAGAGTACGACCATCTTCCAACTGCTTCCCGGCAAA 30057 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | ||| || ||||| || || ||||||||||| ||||| || ||||| Sbjct 30056 AATTAGCCTCTGCTGG---TCTGGAGGAATACCCTCTTTATCCTGAATTTTTGCCTTCAC 30000 Query 288399 GTTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 || || || | |||| ||| || || || | || || ||||| || || || || Sbjct 29999 ATTGTCAATTGTATCGGAACTC---TCAACCTCCAATGTTATGGTCTTTCCAGTAAGGGT 29943 Query 288456 CTTGACGAATATCTGCAT 288473 ||| || || || ||||| Sbjct 29942 CTTAACAAAAATTTGCAT 29925 >seq322 Length=397916 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | |||||| || | ||||| || ||| || ||||| || || || || Sbjct 312530 TCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGC 312589 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| || || | ||| || ||||| ||||| || | ||| ||| | || Sbjct 312590 TAGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGG 312649 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || ||||| |||||||| || || || || || || || | |||| ||||| || Sbjct 312650 GATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATTGTATCGGAGGATTCAAC 312709 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || |||| ||||| |||||||||||||| Sbjct 312710 CTCAAGGGTGATGGTTTTTCCAGTCAAGGTCTTAACGAATATCTGCAT 312757 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | |||||| || | ||||| || ||| || ||||| || || || || Sbjct 333639 TCCACCTCTCAATCTAAGAACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGC 333698 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| || || | ||| || ||||| ||||| || | ||| ||| | || Sbjct 333699 TAGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCACTGCTGATCAGGAGG 333758 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || ||||| |||||||| || || || || || || || | ||| ||||| || Sbjct 333759 GATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATTGTATCTGAGGATTCAAC 333818 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| | || || |||| ||||| |||||||||||||| Sbjct 333819 CTCAAGGGTGATAATTTTGCCAGTCAAGGTCTTAACGAATATCTGCAT 333866 Score = 111 bits (122), Expect = 4e-19 Identities = 167/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | |||||| || | ||||| || ||| || || || || || || || Sbjct 312302 TCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAATCTGC 312361 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| || || | |||||| ||||| ||||| || | ||| ||| ||||| Sbjct 312362 TAGGGTTCTTCCATCCTCAAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGA---TCTGG 312418 Query 288366 ---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||||||| |||||||| || || |||||||| || || |||| || || | || Sbjct 312419 AGGGATTCCTTCCTTATCCTGAATCTTAGCTTTCACATTATCGATAGTAT--CTGAACTC 312476 Query 288423 T--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || | || || ||||| || || | |||||| || || ||||||||| Sbjct 312477 TCAACCTCTAAAGTAATAGTCTTTCCTGTTAAAGTCTTCACAAAAATCTGCATT 312530 Score = 107 bits (118), Expect = 5e-18 Identities = 166/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | ||||||||| | ||||| || ||| || || || || || || || Sbjct 312074 TCCACCTCTCAATCTAAGTACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAATCAGC 312133 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| || || | ||||| ||||| ||||| || | ||| ||| ||||| Sbjct 312134 TAGGGTTCTTCCATCCTCAAGCTGTTTCCCTGCAAAGATAAGCCTCTGCTGA---TCTGG 312190 Query 288366 ---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||| ||||||||||| || || |||||||| || || |||| || || | || Sbjct 312191 AGGGATTCCCTCTTTATCCTGAATCTTAGCTTTCACATTATCGATAGTAT--CTGAACTC 312248 Query 288423 T--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || | || || || || || |||| |||||| || || || |||||| Sbjct 312249 TCAACCTCCAAAGTAATAGTTTTTCCTGTCAAAGTCTTAACAAAAATTTGCATT 312302 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || |||| ||| || |||||||| || || || || || ||||| || ||| Sbjct 312774 AGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGGCCATCT 312833 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 ||||||||||| || || ||||| || | || ||| | ||| || ||||| || || Sbjct 312834 TCTAATTGTTTACCGGCAAAGATAAGCCTTTGCTGATCAGGTGGAATCCCTTCCTTGTCT 312893 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || ||||| || || ||||| | ||| || || || || ||||| || Sbjct 312894 TGGATCTTAGCTTTAACATTGTCTATGGTATCAGAAATCTCCACCTCAAGGGTGATGGTT 312953 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||| || || ||||| || ||||| Sbjct 312954 TTACCGGTCAATGTTTTCACGAAAATTTGCAT 312985 Score = 104 bits (114), Expect = 6e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || || |||| ||| || |||||||| || || || || || ||||| || |||||| Sbjct 333886 ACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGGCCATCTTCT 333945 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 |||||||| || |||||||| || | || ||| | ||| || ||||| || || ||| Sbjct 333946 AATTGTTTACCGGCGAAGATAAGCCTTTGCTGATCAGGTGGAATCCCTTCCTTGTCTTGG 334005 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTC 288441 || || ||||| ||||| ||||| | ||| ||| || | || || ||||| || Sbjct 334006 ATCTTAGCTTTAACGTTGTCTATGGTATCAGAACTC---TCCGCCTCAAGGGTGATGGTT 334062 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||| || || ||||| || ||||| Sbjct 334063 TTACCCATCAATGTTTTCACGAAAATTTGCAT 334094 Score = 89.7 bits (98), Expect = 1e-12 Identities = 165/239 (69%), Gaps = 15/239 (6%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || || | || || || | || ||| || ||||||||||| | Sbjct 333179 CATG-CCACCACGAAGCCTCAAAACCAGGTGGAGAGTAGATTCCTTCTGGATATTATAAT 333237 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTG----A 288357 | || || || | || ||||| || || || || || || || || | ||| || | Sbjct 333238 CAGCCAGAGTACAACCATCTTCCAACTGCTTGCCGGCAAAAATTAGCCTCTGCTGGTCCA 333297 Query 288358 GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG--- 288414 || || || || ||||||||||| ||||| |||||||| || || |||| |||| Sbjct 333298 GA----GGAATACCCTCTTTATCCTGAATTTTTGCTTTCACATTGTCAATAGTATCGAAA 333353 Query 288415 CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || | || || ||||| || || || ||||| || || || ||||| Sbjct 333354 CTC---TCAACCTCCAAAGTTATGGTCTTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 333409 >seq1740 Length=56962 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || | ||| | ||| || |||||||| || || || || Sbjct 21663 CCACCGCGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 21604 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || || || ||||| || || ||||||||||| || |||| Sbjct 21603 AGGGTACGCCCATCCTCCAACTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGG 21544 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| ||||| || || || ||||| || || ||||| | ||| ||| || Sbjct 21543 ATCCCTTCCTTATCTTGAATCTTGGCTTTAACATTGTCTATGGTATCAGAACTC---TCA 21487 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || || || || || || || |||||||| || || ||||| Sbjct 21486 ACTTCGAGAGTAATGGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 21437 Score = 105 bits (116), Expect = 2e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | | || || |||| ||| || || || || || ||||| || Sbjct 22576 TCCACCACGAAGGCGCAACACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGC 22517 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| || || ||||| || || || ||||||| | ||| ||| ||| Sbjct 22516 AAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 22457 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || ||||| ||||| || || || || || || | || |||||| Sbjct 22456 GATTCCTTCCTTGTCCTGTATTTTTGCCTTGACATTATCAATTGTGTCTGAACTTTCTAC 22397 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | ||||| ||||| ||||||| ||||| || || |||||||| Sbjct 22396 TTCCAAGGTGATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 22349 >seq37 Length=1182629 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/219 (71%), Gaps = 13/219 (6%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||||| || || || |||||||| || || || || || | ||| ||| Sbjct 291956 AGCACAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTTCCATCT 292015 Query 288322 TCTAATTGTTT-TCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTT 288377 || || ||||| ||| || ||||||| | ||| ||| |||||| || || || || Sbjct 292016 TCCAACTGTTTATCCAGCAAAGATCAACCTCTGCTGA---TCTGGGGGAATACCCTCCTT 292072 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGT 288434 ||||||||| || || || || || || || | || ||| ||| || || | || Sbjct 292073 ATCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCT---TTCCACCTCCAAGGT 292129 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||||| |||||| || ||||| ||||| Sbjct 292130 TATGGTCTTTCCGGTCAAAGTCTTCACAAATATTTGCAT 292168 >seq1642 Length=65368 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/219 (70%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || || |||| ||| ||||| || || ||||| || || | || || || || Sbjct 33979 AAGGACAAGGTGAAGGGTGGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCGGCCATC 33920 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTT 288377 ||| | || ||||| || || |||| | || || |||||| || |||||||| Sbjct 33919 TTCCAGCTGCTTTCCAGCAAAAATCAATCTTTGCTGG---TCTGGGGGGATACCTTCTTT 33863 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGT 288434 ||||| || || || || || || || |||| || |||| ||||| || | || Sbjct 33862 GTCCTGTATCTTGGCCTTTACATTGTCAATAGTGTCTGAGCTC---TCTACCTCCAAGGT 33806 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| |||||||| ||||| |||||||| Sbjct 33805 AATAGTCTTCCCGGTAAGAGTCTTCACGAAAATCTGCAT 33767 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/197 (71%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| ||||| || || || || | || ||||| | || |||||||| || Sbjct 54352 TCTTTCTGGATGTTATAATCAGCCAGGGTTCTGCCATCTTCGAGCTGCTTTCCTGCAAAA 54293 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | | ||| ||| |||||| || ||||||||||| || || || || || || Sbjct 54292 ATTAACCTCTGCTGA---TCTGGGGGAATACCTTCTTTATCTTGAATCTTGGCCTTGACA 54236 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || ||||| | || ||| || || || || ||||| ||||| || || || ||| Sbjct 54235 TTGTCTATGGTGTCAGAACTC---TCCACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTC 54179 Query 288457 TTGACGAATATCTGCAT 288473 || || || |||||||| Sbjct 54178 TTAACAAAGATCTGCAT 54162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179239904833472