Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1210 89.7 1e-12 >seq1210 Length=122563 Score = 89.7 bits (98), Expect = 1e-12 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 243511 GAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTA-TTGG 243569 || || ||||| | ||| | ||||| ||||||| || |||| ||| | ||| |||| Sbjct 42898 GATGCTGTTGAGATCGAGAGAGAATTTGTTTGCGAAGCGCTTCCTTGC-GCTTTAGTTGG 42956 Query 243570 CATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGC 243629 ||||| ||| | ||| | ||||| || || || || || || | | || | Sbjct 42957 AATGAATGGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCTGATAGATTGTTGTGTGA 43016 Query 243630 GCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTC 243689 |||||||| || |||| | || || |||| || |||| | ||||| | ||||| Sbjct 43017 GCTTGGTTGTGGGAAAATTTATAATGTTCAGAATCCTTTTGATTGGATGGATTTGATTTC 43076 Query 243690 GCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||||| |||||||||||||| || || ||||| || | || ||||| Sbjct 43077 GCTTCAGGGGAAAACTAACTTTTTTGAGAAGCGCGTTGGCGAGTATCA 43124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102492481054400