Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq662 96.9 4e-15 >seq662 Length=244491 Score = 96.9 bits (106), Expect = 4e-15 Identities = 226/337 (67%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 10878 |||||| || ||| | ||| || || || ||||||| || || || | ||||| Sbjct 188833 GTCAAGAATGTCAGCCCTGTTGGTTGCTGCAATGACAATGACCCCGGTATTACCCTCAAA 188774 Query 10879 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCAT 10938 |||||||| || ||||| ||||| |||| ||| ||||| | |||||| ||| | Sbjct 188773 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCGTTCCCTCC--- 188717 Query 10939 ACCACCCGCACTGC---GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 |||| || ||| ||||| | || || || ||||||||||| | ||||| ||||| Sbjct 188716 ACCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACA 188657 Query 10996 CGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCAC 11055 || ||| || ||| | || | ||| || |||| ||||| ||||| || Sbjct 188656 AGGAGCATTCTCTTTGGCTTTCTTGAATAAATCACGAACTCGAGAAGCACCAACACCGAC 188597 Query 11056 AAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCG 11114 |||||| || ||||| | | | | | |||| || || ||||| | |||||||| Sbjct 188596 AAACATCTCAACAAACTCAGAACCAG-AGATTGAGAAAAACGGGACACCTGCTTCACCCG 188538 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | || || ||| | || ||||| || ||||| || Sbjct 188537 CAATAGCCTTGGCTAATAGCGTCTTACCAGTCCCTGG 188501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597148827185920