Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1039 116 4e-21 seq1436 114 1e-20 seq1740 111 2e-19 seq37 102 9e-17 seq23 100 3e-16 seq147 89.7 6e-13 >seq1039 Length=240209 Score = 116 bits (128), Expect = 4e-21 Identities = 160/220 (73%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | ||| ||||||||| |||||||||||||| || || ||| | Sbjct 129315 ACGGAGCACCAAATGGAGCGTGGACTCCTTTTGGATATTGTAATCAGCAAGGGTACGCCC 129374 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| ||||| || || || ||||||||||| | ||| | | ||||| Sbjct 129375 GTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGGATCCCTTCCTT 129434 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168 | | ||| | || | | | | | | | | || || ||| || || |||| | Sbjct 129435 AT-CTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTC---TCAACTTCGAGAG 129490 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| ||||| || || ||||| || ||||||||||| Sbjct 129491 TGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 129530 >seq1436 Length=88924 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||| | |||| || ||||| || |||||||| || ||||| || |||| || || || Sbjct 7289 ATGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGCAAGAGTGCGGCCGTCTTCAAGTTG 7348 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 || || ||||| ||||| ||||||||||| | ||| | | |||||||| |||||| Sbjct 7349 TTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATTTT 7408 Query 42125 TTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183 ||||| ||| | | | ||||| ||||| || || | || ||||||||||| | Sbjct 7409 GGCTTTGA-CGTTGTCGATGGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGG 7467 Query 42184 TTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || |||||||| ||||| Sbjct 7468 TTAGGGTTTTCACAAAGATCTGCAT 7492 Score = 102 bits (112), Expect = 9e-17 Identities = 140/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||| || |||||||| || ||||| || |||| || || || || || ||||| Sbjct 39029 TCTTTTTGGATGTTGTAATCGGCAAGAGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAG 39088 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||| ||||| | ||| | | |||||||| |||||| ||||| ||| Sbjct 39089 ATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCTTTGA-CGTT 39147 Query 42138 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| ||||| || || | || ||||||||| ||| ||| || || || Sbjct 39148 GTCGATGGTGTCGGAGGATTCTACCTCTAGGGTTATGGTTTTG-CCGGTAGGGTTTTCAC 39206 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 39207 GAAGATCTGCAT 39218 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | || || | ||| ||||| | ||| ||| || || ||||| ||||| || Sbjct 38765 CCTCCACGCAACCGAAGCACTAAATGAAGCGTGGACTCTTTCTGGATATTATAATCCGCA 38824 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| | | | || || | ||||| || || || || | ||||||||| || | || Sbjct 38825 AGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGG 38884 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 42160 | | || || ||| ||| | || | | ||| | | | |||||| ||||| || Sbjct 38885 ATTCCTTCTTTATCC-TGAATCTTCGCCTTCACGTTGTCGATTGTGTCGGAGGATTCAAC 38943 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||||||||| || ||||| || || |||||||||||||| Sbjct 38944 TTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACAAAGATTTGCAT 38991 >seq1740 Length=56962 Score = 111 bits (122), Expect = 2e-19 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || ||||| | || | ||| | ||| ||||| || || ||||||||||| Sbjct 22348 ACCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGC 22289 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| |||||||| ||||||| ||||||||| | || Sbjct 22288 CAAGGTACGGCCATCTTCAAGCTGCTTCCCAGCGAAAATGAGTCTCTGCTGGTCCGGAGG 22229 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | || |||||||||| ||| || ||| | | | | ||||| ||| || Sbjct 22228 AATGCCCTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATTGTGTCTGAACTC---TC 22172 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| || || || | ||||| |||||||||||||| Sbjct 22171 AACCTCCAAAGTGATGGTCTTCCCTGTCAAGGTCTTCACAAAGATTTGCAT 22121 Score = 107 bits (118), Expect = 2e-18 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | ||| ||||||||| || ||||||||||| || || ||| | Sbjct 21652 ACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCC 21593 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | |||||| ||||| || || || ||||||||||| | ||| | | ||||| Sbjct 21592 ATCCTCCAACTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGGATCCCTTCCTT 21533 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168 | | ||| | || | || | | | | | | || || ||| || || |||| | Sbjct 21532 AT-CTTGAATCTTGGCTTTAACATTGTCTATGGTATCAGAACTC---TCAACTTCGAGAG 21477 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||||||| || || || ||||| |||||||||||||| Sbjct 21476 TAATGGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 21437 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| || |||||||| | ||| ||||||||| || ||||||||||| || || || | Sbjct 43799 ACGGAAAACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGACC 43858 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 42096 || || |||||||| ||||| || || || ||||||||||||| Sbjct 43859 ATCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCGG 43902 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || ||||| | || | ||| | || ||||| || || |||||||||||| Sbjct 42771 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCC 42830 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || |||||||| ||||| || || | | |||||||| | || Sbjct 42831 AATGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGAGGA 42890 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | || |||||||||| ||| || ||| | | | | |||||| ||| || Sbjct 42891 ATGCCCTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATCGTGTCTGAACTC---TCA 42947 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || |||||||| || || | ||||||||||| || ||||| Sbjct 42948 ACCTCCAAAGTAATGGTTTTCCCTGTCAATGTCTTTACAAAAATCTGCAT 42997 >seq37 Length=1182629 Score = 102 bits (112), Expect = 9e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | || | ||| | ||| |||||| || || ||||||||||| Sbjct 292902 ACCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGC 292961 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||||| |||| || | |||||| || ||||| ||||| || ||||| || | || Sbjct 292962 AAGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGATCCGGAGG 293021 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | ||||||||| ||| || ||||| ||| | | | ||||| ||| || Sbjct 293022 AATTCCTTCCTTGTCCTGGATCTTGGCTTTGA-CGTTGTCGATGGTGTCAGAGCT---TT 293077 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || | |||||||| || || || || || || || ||||||||||| Sbjct 293078 CCACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATTTGCAT 293129 >seq23 Length=202804 Score = 100 bits (110), Expect = 3e-16 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||| || |||||||| || ||||| || | || || || || || || ||||| Sbjct 5450 TCTTTTTGGATGTTGTAATCGGCAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAG 5391 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 ||||| || || || || | ||| | | |||||||| ||| |||| | ||||| ||| Sbjct 5390 ATGAGACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCT-TGAATTTTGGCTTTGA-CGT 5333 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||||| || || | || ||||||||||| ||||| || || | Sbjct 5332 TGTCGATGGTGTCGGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCA 5273 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 5272 CGAAGATTTGCAT 5260 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || |||||||| |||||||| ||||||| | || || ||||| |||||||| || Sbjct 5678 TCTTTCTGAATATTATAATCAGCAAGAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAG 5619 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | ||| ||||| || | ||| | | ||||| || ||| | || | | ||| Sbjct 5618 ATCAATCGTTGCTGATCAGGTGGAATCCCTTCCTTATCT-TGAATCTTCGCCTTCACGTT 5560 Query 42138 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| ||||| || |||| ||||||||||| || ||||| || || || Sbjct 5559 GTCGATTGTGTCTGATGATTCGACTTCGAGTGTGATGGTTTTTCCGGTTAGGGTTTTGAC 5500 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 5499 GAAGATTTGCAT 5488 >seq147 Length=403342 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || |||||||| || || |||| || ||||| || ||||| || || ||||| Sbjct 352330 TCCTTCTGGATATTGTAGTCGGCAAGAGCCCTGTCGTCTTCAAGCTGTTTTCCCGCGAAG 352389 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 |||||| | || || || | ||| | | ||||||| |||||| | |||| ||| Sbjct 352390 ATGAGTTGTTGTTGATCCGGTGGAATTCCTTCCTTGTATTGGATTTTGTCCTTGA-CGTT 352448 Query 42138 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || ||| | || |||| || || || || |||||||| || || || Sbjct 352449 GTCGATGGTATCAGAAGATCCAACCTCGAGGGTTATCGTCTTACCCGTTAGGGTTTTGAC 352508 Query 42197 AAAGATTTGCATTTTC 42212 ||||||||||| ||| Sbjct 352509 GAAGATTTGCATCTTC 352524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543026586652160