Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1436 109 5e-19 seq23 107 2e-18 seq1740 87.8 2e-12 seq78 87.8 2e-12 seq1642 82.4 8e-11 seq322 82.4 8e-11 >seq1436 Length=88924 Score = 109 bits (120), Expect = 5e-19 Identities = 142/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || ||||| |||||||| ||| | ||| || ||| ||||||||||| |||| Sbjct 39026 GATTCTTTTTGGATGTTGTAATCGGCAAGAGTTCGGCCGTCTTCGAGTTGTTTTCCGGCG 39085 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||||||||| || || || ||||| ||||| |||||| ||| | Sbjct 39086 AAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCTTTGACG 39145 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| || || ||||| | || | ||||| || || || ||||| Sbjct 39146 TTGTCGATGGTGTCGGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGT-AGGGTTTTC 39204 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 39205 ACGAAGATCTGCATG 39219 >seq23 Length=202804 Score = 107 bits (118), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| | ||| | | || || ||||| |||||||| ||| Sbjct 5487 GCCTCCGCGGAGACGGAGAACGAGATGGAGCGTGGATTCTTTTTGGATGTTGTAATCGGC 5428 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| || ||||||||||| |||| |||| ||||| ||||| || || || Sbjct 5427 AAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGG 5368 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| ||||| ||| |||| | ||| | ||| || | |||||||| || || Sbjct 5367 AATTCCTTCCTTGTC-TTGAATTTTGGCTTTGACGTTG-TCGATGGTGTCGGAGGATTCT 5310 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||||| | || | ||||| || || || ||||| || || || ||||||| Sbjct 5309 ACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATTTGCATGG 5258 >seq1740 Length=56962 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | ||||||||||| |||||||| || Sbjct 21663 CCACCGCGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 21604 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| | || || || | | | || |||||||| ||||| || || Sbjct 21603 AGGGTACGCCCATCCTCCAACTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGG 21544 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| || || ||| | || | |||| |||| || | ||| || | ||| | Sbjct 21543 ATCCCTTCCTTATC-TTGAATCTTGGCTTTAACATTG-TCTATGGTATCAGAACTCTCAA 21486 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | ||||||||||| || || || ||||| || ||||| Sbjct 21485 CTTCGAGAGTAATGGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 21437 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| | |||||| | || | ||| | | | || ||||| || |||||||| ||| | Sbjct 42999 CCGCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 43058 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||||| |||| | | || || | ||| ||||| ||||| Sbjct 43059 AAGGTTCGGCCATCTTCCAACTGTTTTCCGGCAAAAATGAGCCTCTGCTGGTCTGGAGGG 43118 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | |||| ||||| | | ||||| | ||| | Sbjct 43119 ATACCCTCCTTGTCT-TGAATCTTAGCCTTTACATTGT-CAATTGTGTCTGAGCTCTCAA 43176 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| || || || || || |||||||||||||| Sbjct 43177 CCTCCAAAGTAATTGTTTTGCCTGTAAGGGTCTTCACAAAAATCTGCAT 43225 >seq78 Length=963227 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || |||||||||||| | ||| || || || | || || |||| Sbjct 604663 TTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCATCTTCTAACTGCTTTCCGG 604722 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| ||||| || ||||| || || || ||||| ||||| ||| || ||| | Sbjct 604723 CGAAGATGAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTGA 604782 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | ||||| | ||||| ||||||| || | ||| || || || || ||| Sbjct 604783 CATTG-TCGATTGTGTCAGAAGACTCAACCTCGAGGGTTATCGTCTTCCCTGTTAGGGTT 604841 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 604842 TTCACGAAGATCTGCAT 604858 >seq1642 Length=65368 Score = 82.4 bits (90), Expect = 8e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || | ||| | || ||||| | | | ||||| || ||||||||||| || ||| Sbjct 54160 CCACCACGGAGACGGAGCACCAAATGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCT 54101 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||| || ||||| || | | |||| || | ||||||||| || || Sbjct 54100 AA-AGTCCGACCATCCTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGG 54042 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||||||||| ||| | || | ||| |||| || | ||| || | ||| Sbjct 54041 AATGCCTTCTTTGTC-CTGAATCTTGGCCTTAACATTG-TCTATGGTATCTGAACTCTCA 53984 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || |||| || | || || ||||| || || || || || || ||||| Sbjct 53983 ACTTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 53934 >seq322 Length=397916 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| | || |||| || | || | | | ||||||||||| |||||||| || Sbjct 312758 GCCGCCCCTTAACCGCAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGC 312817 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || || | ||||||||||| | |||| || | || || || || || Sbjct 312818 AAGGGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATAAGCCTTTGCTGATCAGGTGG 312877 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| || ||| | |||| || | ||| || | ||||| Sbjct 312878 AATCCCTTCCTTGTCTTGGATCTTAGCTTTAACATTG-TCTATGGTATCAGAAATCTCCA 312936 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | |||||||| |||| ||||| || ||||| ||||| Sbjct 312937 CCTCAAGGGTGATGGTTTTACCGGTCAATGTTTTCACGAAAATTTGCAT 312985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496092281249280