Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1436 140 3e-28 seq23 140 3e-28 seq1740 123 2e-23 seq1039 111 1e-19 seq426 109 5e-19 seq78 109 5e-19 seq322 104 2e-17 seq276 100 3e-16 seq147 100 3e-16 seq933 98.7 9e-16 seq1642 95.1 1e-14 >seq1436 Length=88924 Score = 140 bits (154), Expect = 3e-28 Identities = 176/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || | || | ||||| ||| ||||| || || || |||||||||||||| Sbjct 38762 ATCCCTCCACGCAACCGAAGCACTAAATGAAGCGTGGACTCTTTCTGGATATTATAATCC 38821 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||||||| || ||||| | |||||||| ||||| || || Sbjct 38822 GCAAGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGA 38881 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||||||||| ||||| || || | || | || | |||||||| || || Sbjct 38882 GGGATTCCTTCTTTATCCTGAATCTTCGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTC 38940 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 |||||||| || | ||||| || ||||| ||||| ||||| |||||||| ||| || Sbjct 38941 AACTTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACAAAGATTTGCATGCCGCCAC 38999 Score = 131 bits (144), Expect = 2e-25 Identities = 174/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || | ||| | || | ||| ||||| || || || |||||||||||||| Sbjct 7035 ATTCCACCACGCAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCC 7094 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||||||| || ||||| | |||||||| ||||| || || Sbjct 7095 GCAAGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGA 7154 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||||||||| ||||| || || | || | || | ||||| || || || Sbjct 7155 GGAATTCCTTCTTTATCCTGAATCTTCGCCTTCA-CGTTGTCGATTGTGTCAGAGGATTC 7213 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 |||||||| || | ||||| || ||||| ||||| || || |||||||| ||| || Sbjct 7214 AACTTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACGAAGATTTGCATGCCGCCAC 7272 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || ||||| |||||||| || |||||| Sbjct 7263 ATGCCGCCACGGAGACGGAGAACGAGATGGAGTGTGGATTCTTTTTGGATGTTGTAATCG 7322 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | ||||||||| ||| | || | || |||||||| || Sbjct 7323 GCAAGAGTGCGGCCGTCTTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGT 7382 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || ||||| ||||| ||||| || | || | |||||| || || || Sbjct 7383 GGAATTCCTTCCTTGTCTTGGATTTTGGCTTTGA-CGTTGTCGATGGTGTCAGAGGATTC 7441 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | |||||||||||||| ||||| ||||| || ||||| Sbjct 7442 TACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 7492 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || ||||| |||||||| || |||||| Sbjct 38990 ATGCCGCCACGGAGACGGAGGACGAGGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCG 39049 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | ||||||||| ||| | || | || || ||||| || Sbjct 39050 GCAAGAGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGT 39109 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || ||||| ||||| ||||| || | || | ||||||||| || || Sbjct 39110 GGAATTCCTTCCTTGTCTTGGATTTTGGCTTTGA-CGTTGTCGATGGTGTCGGAGGATTC 39168 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | |||||||||| ||| ||||| || || || ||||| Sbjct 39169 TACCTCTAGGGTTATGGTTTTGCCGG-TAGGGTTTTCACGAAGATCTGCAT 39218 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || |||||||| | || || || || || ||||| || || ||||||||||| Sbjct 6810 CCACCACGGAGCCTGAGAACAAGGTGGAGTGTAGATTCTTTCTGAATATTATAATCAGCA 6869 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | ||||| || || | |||||||| ||||| || || ||| Sbjct 6870 AGAGTCCGTCCATCCTCAAGCTGTTTACCGGCAAAGATCAATCGCTGCTGATCAGGTGGA 6929 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || |||||||| || || | || | || | || || ||| ||| || Sbjct 6930 ATACCCTCCTTGTCTTGAATCTTCGCCTTCA-CGTTATCAATAGTATCAGAACTCTCAAC 6988 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||||| ||| || ||||| | || || |||||||| ||||| Sbjct 6989 CTCAAGAGTAATCGTCTTCCCGGTCAACGTCTTCACAAAAATCTGCAT 7036 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || |||||||| | || || || || || ||||| || || ||||||||||| Sbjct 38537 CCACCACGGAGCCTGAGAACAAGGTGAAGAGTAGATTCTTTCTGAATATTATAATCAGCA 38596 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | ||||| || || | |||||||| ||||| || || ||| Sbjct 38597 AGAGTCCTTCCATCCTCAAGCTGTTTACCGGCAAAGATCAATCGCTGCTGATCAGGTGGA 38656 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || ||||||||||| || || | || | || || ||| ||| || Sbjct 38657 ATCCCCTCCTTATCTTGAATCTTCGCCTTCACATTATCAATAGTATCAGAACTCTCCACC 38716 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||||| || || || || | || || |||||||| |||||| Sbjct 38717 TCAAGAGTAATAGTCTTCCCCGTCAACGTCTTCACAAAAATCTGCATC 38764 >seq23 Length=202804 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||||||||| | | || ||||| ||||| ||||| |||||||| || |||||| Sbjct 5489 ATGCCTCCGCGGAGACGGAGAACGAGATGGAGCGTGGATTCTTTTTGGATGTTGTAATCG 5430 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | ||||||||| ||| | || | ||||| || || || Sbjct 5429 GCAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGT 5370 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || ||||||||||| ||||| || | || | ||||||||| || || Sbjct 5369 GGAATTCCTTCCTTGTCTTGAATTTTGGCTTTGA-CGTTGTCGATGGTGTCGGAGGATTC 5311 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | |||||||||||||| ||||| || || |||||||| Sbjct 5310 TACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATTTGCAT 5260 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| || | || ||||| || || ||||| || || ||||||||||| Sbjct 5714 CCACCACGGAGTCTAAGAACAAGATGAAGTGTAGATTCTTTCTGAATATTATAATCAGCA 5655 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | ||||| || || | |||||||||||||| || || ||| Sbjct 5654 AGAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGTGGA 5595 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| ||||||||||| || || | || | || | ||||| || || ||||| Sbjct 5594 ATCCCTTCCTTATCTTGAATCTTCGCCTTCA-CGTTGTCGATTGTGTCTGATGATTCGAC 5536 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || | ||||| |||||||| ||||| || || |||||||| Sbjct 5535 TTCGAGTGTGATGGTTTTTCCGGTTAGGGTTTTGACGAAGATTTGCAT 5488 >seq1740 Length=56962 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | ||| | ||| || || || ||||||||||| || ||||| Sbjct 21666 ATACCACCGCGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCA 21607 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || ||||| || | |||| || |||||||| || Sbjct 21606 GCAAGGGTACGCCCATCCTCCAACTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGT 21547 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| ||||||||||| || ||| | |||| ||| || ||| ||| Sbjct 21546 GGGATCCCTTCCTTATCTTGAATCTTGGCTTTAACATTGTCTATGGTATCAGAACTCTCA 21487 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||||||||| ||||| || || || || || ||||| ||||||||| Sbjct 21486 ACTTCGAGAGTAATGGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCATC 21436 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || || | ||| || || || ||||||||||| || ||||| Sbjct 43785 ATCCCACCACGGAGACGGAAAACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCA 43844 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| || ||||| || | |||| || |||||||| | Sbjct 43845 GCAAGGGTACGACCATCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCGGAT 43904 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 | || ||||| ||||||||||| || || | |||||||| || ||| ||| Sbjct 43905 AGGATCCCTTCCTTATCTTGAATCTTGGCCTTAACATTGTCTACGGTATCTGAACTCTCA 43964 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||||||||| || ||||| || || | | ||||| ||||||||| Sbjct 43965 ACTTCGAGAGTAACAGTCTTGCCAGTGAGGGCCGTAACAAATATTTGCATC 44015 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || |||||||| ||||| || ||||| | ||| ||| || Sbjct 42789 ACAAGATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCCAATGTTCGGCCATCTTCA 42848 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | ||||| | |||||||||||| |||||||| || || || || Sbjct 42849 AGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 42908 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||| | || | ||||| ||| ||| || || | ||||| ||||| Sbjct 42909 ATCTTAGCTTTTACATTGTCAATCGTGTCTGAACTCTCAACCTCCAAAGTAATGGTTTTC 42968 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || ||||||||||| ||||| Sbjct 42969 CCTGTCAATGTCTTTACAAAAATCTGCAT 42997 >seq1039 Length=240209 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | ||| ||||| || |||||||||||||| ||||| Sbjct 129301 ATACCACCACGGAGACGGAGCACCAAATGGAGCGTGGACTCCTTTTGGATATTGTAATCA 129360 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||| || ||||| || | |||| || |||||||| || Sbjct 129361 GCAAGGGTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGT 129420 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| ||||||||||| || || | |||| ||| || ||| ||| Sbjct 129421 GGGATCCCTTCCTTATCTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCA 129480 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||||||| | || |||||||| || || || || || ||||||||| Sbjct 129481 ACTTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCATC 129531 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| || || || ||||| || || ||||| |||||||| Sbjct 129073 ATACCACCACGAAGACGCAACACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCA 129132 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| || | |||||||| || | ||||| | ||||| || || Sbjct 129133 GCCAGGGTTCTGCCATCTTCGAGCTGTTTTCCCGCAAAAATCAACCTCTGCTGATCTGGG 129192 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||||||||| || || |||| |||| |||||| ||| ||| Sbjct 129193 GGAATACCTTCTTTATCTTGTATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCT 129252 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || || || || || || ||||| || ||||| Sbjct 129253 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAGATCTGCAT 129302 >seq426 Length=522792 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || ||||||||||| |||||||| || ||| Sbjct 162592 CCACCACGGAGACGGAGAACAAGGTGAAGAGTTGATTCCTTCTGGATATTGTAGTCGGCA 162651 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | |||||||||||| | || | |||||| || ||||| ||| Sbjct 162652 AGAGTGCGGCCGTCTTCAAGCTGTTTTCCTGCGAAGATGAGTCGTTGTTGATCCGGTGGA 162711 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| || ||||| ||||| |||| || | || | ||| || ||||| || || Sbjct 162712 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGA-CGTTGTCGATGGTATCAGAAGATTCAAC 162770 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | ||| || || ||||| ||||| || || || |||||| Sbjct 162771 CTCGAGGGTTATCGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATC 162819 >seq78 Length=963227 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||||||||| ||||| || || ||| || || ||| || Sbjct 604650 ACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCATCTTCT 604709 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || ||||| ||| | || | ||||||||||| || ||||| ||||| || ||||| Sbjct 604710 AACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGG 604769 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| || | ||||| |||||||| || ||||| || | ||| || Sbjct 604770 ATCTTGGCTTTGACATTGTCGATTGTGTCAGAAGACTCAACCTCGAGGGTTATCGTCTTC 604829 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| || || || |||||| Sbjct 604830 CCTGTTAGGGTTTTCACGAAGATCTGCATC 604859 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || ||||||||||| |||||||| || ||| Sbjct 597671 CCACCACGGAGACGGAGAACAAGGTGAAGAGTTGATTCCTTCTGGATATTGTAGTCGGCA 597730 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | |||||||| ||| | || | |||||| || ||||| ||| Sbjct 597731 AGAGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGTCGTTGTTGATCCGGTGGA 597790 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| || ||||| ||||| |||| || | || | ||| || ||||| || || Sbjct 597791 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGA-CGTTGTCGATGGTATCAGAAGATTCAAC 597849 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | ||| || || ||||| ||||| || || || |||||| Sbjct 597850 CTCGAGGGTTATCGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATC 597898 >seq322 Length=397916 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || |||||||| || || || || || |||||||| |||||||||||||| Sbjct 333180 ATGCCACCACGAAGCCTCAAAACCAGGTGGAGAGTAGATTCCTTCTGGATATTATAATCA 333239 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || || || || | || | | ||||||||| | Sbjct 333240 GCCAGAGTACAACCATCTTCCAACTGCTTGCCGGCAAAAATTAGCCTCTGCTGGTCCAGA 333299 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || |||||||| ||||||||| ||| | || | || ||| || ||| Sbjct 333300 GGAATACCCTCTTTATCCTGAATTTTTGCTTTCACATTGTCAATAGTATCGAAACTCTCA 333359 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || || || || || || || |||||||||||||| Sbjct 333360 ACCTCCAAAGTTATGGTCTTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 333409 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 || || ||| || || || || || ||||||||||| || ||||| | ||| Sbjct 312770 CCGCAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGGCC 312829 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || |||||||| || || | || | | |||||| || || ||||| ||||| || Sbjct 312830 ATCTTCTAATTGTTTACCGGCAAAGATAAGCCTTTGCTGATCAGGTGGAATCCCTTCCTT 312889 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || ||| | |||| ||| || ||| ||| || || || || | Sbjct 312890 GTCTTGGATCTTAGCTTTAACATTGTCTATGGTATCAGAAATCTCCACCTCAAGGGTGAT 312949 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||| | ||||| || |||||||||||| Sbjct 312950 GGTTTTACCGGTCAATGTTTTCACGAAAATTTGCATC 312986 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 || |||||| || || || || || ||||||||||| || ||||| | ||| Sbjct 333879 CCGCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGGCC 333938 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || |||||||| || ||| | || | | |||||| || || ||||| ||||| || Sbjct 333939 ATCTTCTAATTGTTTACCGGCGAAGATAAGCCTTTGCTGATCAGGTGGAATCCCTTCCTT 333998 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||| || || ||| | || | |||| ||| || ||| ||| | || || || | Sbjct 333999 GTCTTGGATCTTAGCTTTAA-CGTTGTCTATGGTATCAGAACTCTCCGCCTCAAGGGTGA 334057 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | | ||||| || |||||||||||| Sbjct 334058 TGGTTTTACCCATCAATGTTTTCACGAAAATTTGCATC 334095 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | ||| || || |||||||||||||| |||||||| Sbjct 311844 ATACCCCCACGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCA 311903 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| || | ||| || || || | || | | ||||| || || Sbjct 311904 GCAAGGGTTCTTCCATCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGA 311963 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || ||||| ||||| || ||| | || | || || ||| ||| Sbjct 311964 GGGATACCCTCCTTATCCTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCA 312023 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| ||||| || || | ||| || |||||||||||||| Sbjct 312024 ACCTCTAAAGTAATAGTTTTTCCTGTCAAAGTCTTAACAAAAATTTGCAT 312073 >seq276 Length=436033 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || ||||||||||| |||||||| || ||| Sbjct 192481 CCACCACGGAGACCGAGAACAAGGTGAAGAGTTGATTCCTTCTGGATATTGTAGTCGGCA 192422 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | |||||||| ||| | || | |||||| || ||||| ||| Sbjct 192421 AGAGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGTCGTTGTTGATCCGGTGGA 192362 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| || ||||| ||||| |||| || | || | ||| || ||||| || || Sbjct 192361 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGA-CGTTGTCGATGGTATCAGAAGATTCAAC 192303 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | ||| || || || || ||||| || || || |||||| Sbjct 192302 CTCGAGGGTTATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATC 192254 >seq147 Length=403342 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || ||||||||||| |||||||| || ||| Sbjct 352294 CCACCACGGAGACAGAGAACAAGGTGGAGAGTTGATTCCTTCTGGATATTGTAGTCGGCA 352353 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | | | || || | |||||||| ||| | || | | |||| || ||||| ||| Sbjct 352354 AGAGCCCTGTCGTCTTCAAGCTGTTTTCCCGCGAAGATGAGTTGTTGTTGATCCGGTGGA 352413 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| || | ||| ||||| | |||| || | || | ||| || ||||| | || Sbjct 352414 ATTCCTTCCTTGTATTGGATTTTGTCCTTGA-CGTTGTCGATGGTATCAGAAGATCCAAC 352472 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | ||| || || ||||| ||||| || || ||||||||| Sbjct 352473 CTCGAGGGTTATCGTCTTACCCGTTAGGGTTTTGACGAAGATTTGCATC 352521 >seq933 Length=173040 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 || || ||| || || || || || ||||||||||| || ||||| | ||| Sbjct 29228 CCGCAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGGCC 29169 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||||||||| || || | || | | |||||| || || ||||| ||||| || Sbjct 29168 ATCTTCCAATTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGAATCCCTTCCTT 29109 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||| || || ||| | || | |||| ||| || ||| ||| || || || || | Sbjct 29108 GTCTTGGATCTTAGCTTTAA-CGTTGTCTATGGTATCAGAACTCTCCACCTCAAGGGTGA 29050 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| || | ||||| || |||||||||||| Sbjct 29049 TGGTTTTGCCAGTCAATGTTTTCACGAAAATTTGCATC 29012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || |||||||| || | |||| || |||||||| |||||||||||||| Sbjct 30154 ATGCCACCACGAAGCCTCAAAACCAAGTGCAAAGTAGATTCCTTCTGGATATTATAATCA 30095 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || || || || | || | | |||||||| || Sbjct 30094 GCCAGAGTACGACCATCTTCCAACTGCTTCCCGGCAAAAATTAGCCTCTGCTGGTCTGGA 30035 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || |||||||| ||||||||| || | || | || |||||| ||| Sbjct 30034 GGAATACCCTCTTTATCCTGAATTTTTGCCTTCACATTGTCAATTGTATCGGAACTCTCA 29975 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | || || || || || || || |||||||||||||| Sbjct 29974 ACCTCCAATGTTATGGTCTTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 29925 >seq1642 Length=65368 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || || || || || || || || ||||| |||||||| Sbjct 54391 ATACCACCACGAAGACGCAAGACAAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCA 54332 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| || | || |||||||| | || || | ||||| || || Sbjct 54331 GCCAGGGTTCTGCCATCTTCGAGCTGCTTTCCTGCAAAAATTAACCTCTGCTGATCTGGG 54272 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||||||||||||||| || |||| |||| |||||| ||| ||| Sbjct 54271 GGAATACCTTCTTTATCTTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCC 54212 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || || || || || || ||||| || ||||| Sbjct 54211 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAGATCTGCAT 54162 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || || || ||||| | | ||| | ||| || || || || || || || || ||||| Sbjct 54163 ATACCACCACGGAGACGGAGCACCAAATGGAGGGTAGACTCTTTCTGAATGTTGTAATCA 54104 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | | | | ||| || | |||||||| || | || | | || ||||| || Sbjct 54103 GCTAAAG-TCCGACCATCCTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGTTGGTCTGG 54045 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 |||||||||||||| || ||||| || || | |||| ||| || ||| ||| Sbjct 54044 TGGAATGCCTTCTTTGTCCTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTC 53985 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||||||| | || ||||| || || || || || || ||||||||| Sbjct 53984 AACTTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCATC 53933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451848253303040