Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq662 102 1e-16 >seq662 Length=244491 Score = 102 bits (112), Expect = 1e-16 Identities = 274/415 (66%), Gaps = 8/415 (2%) Strand=Plus/Minus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793 |||||| || ||| | ||| || || || ||||||| || || || | || || Sbjct 188833 GTCAAGAATGTCAGCCCTGTTGGTTGCTGCAATGACAATGACCCCGGTATTACCCTCAAA 188774 Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCAT 12853 |||||||| || ||||| ||||| |||| ||| ||||| | |||||| ||| | Sbjct 188773 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCGTTCCCTCC--- 188717 Query 12854 ACCACCCGCACTGC---GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 |||| || ||| ||||| | || || || |||||||| |||| ||||| ||||| Sbjct 188716 ACCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACA 188657 Query 12911 CGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 || ||| || ||| | || | ||| || |||| ||||| ||||| || Sbjct 188656 AGGAGCATTCTCTTTGGCTTTCTTGAATAAATCACGAACTCGAGAAGCACCAACACCGAC 188597 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCG 13029 ||||||||| ||||| | | | | | |||| || || ||||| | |||||||| Sbjct 188596 AAACATCTCAACAAACTCAGAACCAG-AGATTGAGAAAAACGGGACACCTGCTTCACCCG 188538 Query 13030 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCAC 13089 | || || ||| | || ||||| || |||||||| || ||||||| | || Sbjct 188537 CAATAGCCTTGGCTAATAGCGTCTTACCAGTCCCTGGGGGACCAACGAGAAGAACTCCTT 188478 Query 13090 GTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCAC 13144 ||| || | || || | || | | | |||||| | ||| ||||| || || Sbjct 188477 TTGGTATGCGAGCCCCGATAGCAGTGAACCTCTCGGGCTTTTTCAGAAACTCGAC 188423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613296889731840