Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1436 102 9e-17 seq276 87.8 2e-12 seq78 87.8 2e-12 seq1740 86.0 7e-12 seq37 86.0 7e-12 seq426 84.2 2e-11 seq23 84.2 2e-11 >seq1436 Length=88924 Score = 102 bits (112), Expect = 9e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| || |||||||| ||||| |||| |||||||| |||| || Sbjct 7284 ACGAGATGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGCAAGAGTGCGGCCGTCTTCA 7343 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || || || |||||||| || | ||||||||||| | || | | |||||||| | Sbjct 7344 AGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGG 7403 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 || || |||| ||| | | | ||||| ||||| || || | || |||||||| Sbjct 7404 ATTTTGGCTTTGA-CGTTGTCGATGGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTT 7462 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || ||||| |||||||| ||||| Sbjct 7463 GCCGGTTAGGGTTTTCACAAAGATCTGCAT 7492 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || |||||||| ||||| |||| ||||| || |||| ||||| || || |||||||| Sbjct 39029 TCTTTTTGGATGTTGTAATCGGCAAGAGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAG 39088 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| ||||| | || | | |||||||| ||| || |||| ||| Sbjct 39089 ATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCTTTGA-CGTT 39147 Query 46523 GCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| ||||| || || | || ||||||||||| || || ||||| || Sbjct 39148 GTCGATGGTGTCGGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGT-AGGGTTTTCAC 39206 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 39207 GAAGATCTGCAT 39218 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || |||||||| || || | ||||| | | | || || | ||||| || || || Sbjct 38800 CTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAA 38859 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | || || ||| |||||| ||| | ||| Sbjct 38860 GATCAATCGCTGCTGATCAGGAGGGATTCCTTCTTTATCCTGAATCTTCGCCTTCA-CGT 38918 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||||| || || | ||||||||||| || || || ||||| | Sbjct 38919 TGTCGATTGTGTCGGAGGATTCAACTTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGA 38978 Query 46581 CAAAGATTTGCAT 46593 ||||||||||||| Sbjct 38979 CAAAGATTTGCAT 38991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| ||| || |||||||| || || | ||||| | | | || || Sbjct 7056 ACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCATCTTCC 7115 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||||| || || || ||||| |||||||| || | || | | || || ||| Sbjct 7116 AATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 7175 Query 46505 ATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | ||| | | | ||||| ||||| || || | ||||||||||| Sbjct 7176 ATCTTCGCCTTCA-CGTTGTCGATTGTGTCAGAGGATTCAACTTCGAGTGTGATGGTTTT 7234 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| || ||||||||||| Sbjct 7235 TCCAGTTAGGGTTTTGACGAAGATTTGCAT 7264 >seq276 Length=436033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||||| |||||||| |||| || ||||| || |||||||| Sbjct 192445 TCCTTCTGGATATTGTAGTCGGCAAGAGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAG 192386 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || || || | || | | |||||||| ||| || ||||| ||| Sbjct 192385 ATGAGTCGTTGTTGATCCGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTGA-CGTT 192327 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || ||||| || || | || || || || ||||| || ||||| || Sbjct 192326 GTCGATGGTATCAGAAGATTCAACCTCGAGGGTTATCGTCTTACCCGTGAGGGTTTTGAC 192267 Query 46582 AAAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 192266 GAAGATCTGCATCTT 192252 >seq78 Length=963227 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||||| |||||||| |||| || ||||| || |||||||| Sbjct 597707 TCCTTCTGGATATTGTAGTCGGCAAGAGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAG 597766 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || || || | || | | |||||||| ||| || ||||| ||| Sbjct 597767 ATGAGTCGTTGTTGATCCGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTGA-CGTT 597825 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || ||||| || || | || || || || ||||| || ||||| || Sbjct 597826 GTCGATGGTATCAGAAGATTCAACCTCGAGGGTTATCGTCTTACCCGTTAGGGTTTTGAC 597885 Query 46582 AAAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 597886 GAAGATCTGCATCTT 597900 >seq1740 Length=56962 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || ||||| | || ||||| | || ||||| ||||| ||||| || | Sbjct 22347 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 22288 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || |||||||| || ||||| || | | ||||||||| | || Sbjct 22287 AAGGTACGGCCATCTTCAAGCTGCTTCCCAGCGAAAATGAGTCTCTGCTGGTCCGGAGGA 22228 Query 46487 ACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGCGTCGCCACCGTGTCG---CTCGATT 46541 | || |||||||||| |||||| ||| | | ||| | ||||| ||| | Sbjct 22227 ATGCCCTCCTTGTCCTGGATCTTAGCTTTTACATTGTCA--ATTGTGTCTGAACTC---T 22173 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||| |||||||| || || |||| || || |||||||||||||| Sbjct 22172 CAACCTCCAAAGTGATGGTCTTCCCTGTCAAGGTCTTCACAAAGATTTGCAT 22121 >seq37 Length=1182629 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/231 (69%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || ||||||| ||| ||||| | ||| |||||| ||||||||||| || | Sbjct 291941 CCACCCCTCAAACGCAGCACAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCCGCA 292000 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTT-GCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || || | | || || | ||| || || || || ||||| | |||||| || | || Sbjct 292001 AGGGTCCTTCCATCTTCCAACTGTTTATCCAGCAAAGATCAACCTCTGCTGATCTGGGGG 292060 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTC 46542 | | |||||| ||| |||||| ||||| | | | ||||| ||| ||| Sbjct 292061 AATACCCTCCTTATCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCT---TTC 292117 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| || ||||| || || |||| || || ||||| |||||||| Sbjct 292118 CACCTCCAAGGTTATGGTCTTTCCGGTCAAAGTCTTCACAAATATTTGCAT 292168 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | ||||| | |||| || | |||||| |||||||| Sbjct 292938 CTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAA 292997 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || ||||| || | || | | ||||||||| |||||| |||| ||| Sbjct 292998 GATGAGACGTTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGA-CGT 293056 Query 46522 CGCC-ACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| |||||| || | |||||||| || || || || |||| Sbjct 293057 TGTCGATGGTGTCAGAGCT---TTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTT 293113 Query 46578 TAACAAAGATTTGCAT 46593 | || ||||||||||| Sbjct 293114 TCACGAAGATTTGCAT 293129 >seq426 Length=522792 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||||| |||||||| |||| || ||||| || || ||||| Sbjct 162628 TCCTTCTGGATATTGTAGTCGGCAAGAGTGCGGCCGTCTTCAAGCTGTTTTCCTGCGAAG 162687 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || || || | || | | |||||||| ||| || ||||| ||| Sbjct 162688 ATGAGTCGTTGTTGATCCGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTGA-CGTT 162746 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || ||||| || || | || || || || ||||| || ||||| || Sbjct 162747 GTCGATGGTATCAGAAGATTCAACCTCGAGGGTTATCGTCTTACCCGTTAGGGTTTTGAC 162806 Query 46582 AAAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 162807 GAAGATCTGCATCTT 162821 >seq23 Length=202804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | || ||||| | || || |||||||| ||||| |||| Sbjct 5488 TGCCTCCGCGGAGACGGAGAACGAGATGGAGCGTGGATTCTTTTTGGATGTTGTAATCGG 5429 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||||| || | || ||||| || || |||||||| || | || || || || | | Sbjct 5428 CAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTG 5369 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCC 46543 | | | |||||||| || || |||| ||| | | | |||||| ||||| Sbjct 5368 GAATTCCTTCCTTGTCTTGAATTTTGGCTTTGA-CGTTGTCGATGGTGTCGGAGGATTCT 5310 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | || ||||||||||| || || ||||| || ||||||||||| Sbjct 5309 ACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATTTGCAT 5260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565044636276480