Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1740 102 6e-17 seq1642 95.1 8e-15 seq1436 93.3 3e-14 seq933 82.4 5e-11 >seq1740 Length=56962 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| | |||||| || || | ||| | ||| ||| || || || || ||||||||| Sbjct 42999 CCGCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 43058 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| ||||| ||||| ||| ||||||| | | |||||| || | || Sbjct 43059 AAGGTTCGGCCATCTTCCAACTGTTTTCCGGCAAAAATGAGCCTCTGCTGGTCTGGAGGG 43118 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || || ||||| | || || || || || | | |||||||| ||| || | Sbjct 43119 ATACCCTCCTTGTCTTGAATCTTAGCCTTTACATTGT--CAATTGTGTCTGAGCTCTCAA 43176 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||||||||||||||| || || | || || || || |||||||| Sbjct 43177 CCTCCAAAGTAATTGTTTTGCCTGTAAGGGTCTTCACAAAAATCTGCAT 43225 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || |||||||| |||||| || |||| |||| || || || ||||| Sbjct 42351 TCTTTCTGAATGTTATAATCAGCCAAAGTCCGGCCATCTTCCAGCTGCTTTCCAGCAAAA 42410 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATAT-TTTTTGTTTA-ATCG 39646 || || | ||||| || | ||| | ||||||||||| ||| || | || | || | Sbjct 42411 ATCAACCTTTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGTATCTTGGTCTTCACATTG 42470 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 || || ||||||| ||| || || ||||| ||||| || || || || | ||| || | Sbjct 42471 TCAATA--GTGTCTGAGCTCTCTACCTCCAAGGTAATAGTCTTTCCGGTAAGAGTCTTCA 42528 Query 39707 CGAAGATCTGCAT 39719 |||| |||||||| Sbjct 42529 CGAAAATCTGCAT 42541 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| |||||||| ||||| |||| || || | ||||||||| | || | ||||| | Sbjct 22505 CATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCT 22446 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 |||| ||||||| || | | | | |||||||| ||||| || ||||| || | Sbjct 22445 TGTCCTGTATTTTTGCCTTGACATTATCAATTGTGTCTGAACTTTCTACTTCCAAGGTGA 22386 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || || || || || ||||||||||| Sbjct 22385 TGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 22349 >seq1642 Length=65368 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || |||||||| |||||| || |||| |||| || || || ||||| Sbjct 33957 TCTTTCTGAATGTTATAATCAGCCAAAGTCCGGCCATCTTCCAGCTGCTTTCCAGCAAAA 33898 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATAT-TTTTTGTTTA-ATCG 39646 || || | ||||| || | ||| | ||||||||||| ||| || |||| || | Sbjct 33897 ATCAATCTTTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGTATCTTGGCCTTTACATTG 33838 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 || || ||||||| ||| || || ||||| ||||| || || || || | ||| || | Sbjct 33837 TCAATA--GTGTCTGAGCTCTCTACCTCCAAGGTAATAGTCTTCCCGGTAAGAGTCTTCA 33780 Query 39707 CGAAGATCTGCAT 39719 |||| |||||||| Sbjct 33779 CGAAAATCTGCAT 33767 >seq1436 Length=88924 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| || | ||| || || | ||| | ||| ||||||||| || || |||||||| Sbjct 7265 GCCGCCACGGAGACGGAGAACGAGATGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGC 7324 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | ||| | || || | |||||| ||| | || || | ||||||||| || | || Sbjct 7325 AAGAGTGCGGCCGTCTTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGG 7384 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| ||||| ||| | ||| | | | ||||| | | ||| | Sbjct 7385 AATTCCTTCCTTGTCTTGGATTTTGGCTTTGA-CGTTGTCGATGGTGTCAGAGGATTCTA 7443 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || | || || ||||| || |||| ||||| || |||||||||||| Sbjct 7444 CCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACAAAGATCTGCATG 7493 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || ||||| || || || ||||| | ||| ||||| || |||||||||| Sbjct 38761 CATC-CCTCCACGCAACCGAAGCACTAAATGAAGCGTGGACTCTTTCTGGATATTATAAT 38819 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | | |||| |||||||| ||||| |||| || || ||||||||||| | Sbjct 38820 CCGCAAGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAG 38879 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | |||||||| || | | | || | | ||| | | | |||||| | | | Sbjct 38880 GAGGGATTCCTTCTTTATC-CTGAATCTTCGCCTTCACGTTGTCGATTGTGTCGGAGGAT 38938 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 || || || | || || ||||| || |||| ||||| || ||||| |||||| || Sbjct 38939 TCAACTTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACAAAGATTTGCATGCCG 38995 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || ||||| | || |||||||| | || ||||| || ||||||||||| || Sbjct 7038 CCACCACGCAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCCGCA 7097 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| |||||||| ||||| |||| || || ||||||||||| | || Sbjct 7098 AGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGA 7157 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||||| || | | | || | | ||| | | | |||||| | | ||| || Sbjct 7158 ATTCCTTCTTTATC-CTGAATCTTCGCCTTCACGTTGTCGATTGTGTCAGAGGATTCAAC 7216 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 || | || || ||||| || |||| ||||| |||||||| |||||| || Sbjct 7217 TTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACGAAGATTTGCATGCCG 7268 >seq933 Length=173040 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 ||||| |||||||| ||| || || ||||||||||| |||| | || |||| ||| Sbjct 30133 ACCAAGTGCAAAGTAGATTCCTTCTGGATATTATAATCAGCCAGAGTACGACCATCTTCC 30074 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 || || |||||| ||||||||| | |||||| || | || | || ||||| || | Sbjct 30073 AACTGCTTCCCGGCAAAAATTAGCCTCTGCTGGTCTGGAGGAATACCCTCTTTATC-CTG 30015 Query 39631 ATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 | |||||| || | || || | | ||| || | || || || ||||| || || || Sbjct 30014 AATTTTTGCCTTCACATTGT--CAATTGTATCGGAACTCTCAACCTCCAATGTTATGGTC 29957 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | || || || || || ||||| Sbjct 29956 TTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 29925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347253498658592