Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1210 147 2e-30 seq1436 132 5e-26 seq23 127 2e-24 seq933 116 4e-21 seq1039 114 1e-20 seq520 111 2e-19 seq37 107 2e-18 seq322 104 2e-17 seq78 104 2e-17 seq1740 102 8e-17 seq1642 102 8e-17 >seq1210 Length=122563 Score = 147 bits (162), Expect = 2e-30 Identities = 401/606 (66%), Gaps = 10/606 (2%) Strand=Plus/Minus Query 132889 ATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAA 132948 ||||| |||||||| || ||||| | || ||||| | ||||| || ||||| ||| Sbjct 42842 ATCAAACAAGCAAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAA 42783 Query 132949 GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAA 133008 || || || ||||| | || |||||||| ||||| || || || |||||| || || Sbjct 42782 GTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAG 42723 Query 133009 AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG 133068 || || | || || || || ||||| || | | || | || || | || Sbjct 42722 AAAAATATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAA--TGAATCAGATG 42665 Query 133069 CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGCACGGCATCGTTTCGA 133126 ||||||| || ||||| || || |||||||| | || || |||||||| | Sbjct 42664 AAT-CGATCCATTTCATAGCCCAATCAGC--TTTCTTTGTAATACAAGGAATCGTTTCAA 42608 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCG 133186 | || | |||||||| ||||| | || | | || || || || | | Sbjct 42607 TTGCATGAAACAAACGATTCTTCTCAACTGAATCATTGATATAAGTCTCAATCAAGAGAC 42548 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTA-AAAGCACCGCGCC 133245 ||||||||| || || | ||||| || ||||| || || ||||| ||||||| ||||| Sbjct 42547 TATACATTTCAGAATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCAC-GCGCC 42489 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || || || ||||||| ||| | | | ||||| || ||||||||||||| Sbjct 42488 TCTGAGACTTGAACTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCG 42429 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 ||||| || ||||| || ||||| ||| || ||||| ||| |||| | | | Sbjct 42428 GAAGCGGCAAAGAAGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTG 42369 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 | ||||| | || | || | || || || ||| ||||||| || || || ||| Sbjct 42368 TTCCAGTGATGAAGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCG 42309 Query 133426 GCTTTTTTGTACATACTCCACATGTCCGAATATTGTA-TGGGAAAAATCACAAACCGGCG 133484 |||||||||||||| ||| || | | ||||| | |||||| | || |||| | | Sbjct 42308 GCTTTTTTGTACATTTCCCAGATTTTAGGGTATTGAATTGGGAACATACAGAAACGGTCA 42249 Query 133485 GGGGTT 133490 ||| || Sbjct 42248 GGGTTT 42243 >seq1436 Length=88924 Score = 132 bits (146), Expect = 5e-26 Identities = 169/229 (74%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || ||||||||||| ||| | || || || || || Sbjct 39218 ATGCAGATCTTCGTGAAAACCCT-ACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 39160 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| ||||||| ||||| || |||||||| | ||||| Sbjct 39159 GACACCATCGACAACG-TCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGACCA 39101 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| || ||||| || || |||| || || || ||| ||||| Sbjct 39100 ACAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCGAACTCTTGCCGATTACAA 39041 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||| | || || || | || || ||| | | |||||| Sbjct 39040 CATCCAAAAAGAATCCACACTCCACCTCGTCCTCCGTCTCCGTGGCGGC 38992 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||||||||| ||| | || || || || | Sbjct 7492 ATGCAGATCTTTGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCT 7433 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| ||||||| ||||| || |||||||| | ||||| Sbjct 7432 GACACCATCGACAACG-TCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCTGACCA 7374 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || ||||| || || |||| ||||| || ||| ||||| Sbjct 7373 GCAGCGTCTCATCTTCGCCGGAAAACAACTTGAAGACGGCCGCACTCTTGCCGATTACAA 7314 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||| | || || ||| | || || ||| | | |||||| Sbjct 7313 CATCCAAAAAGAATCCACACTCCATCTCGTTCTCCGTCTCCGTGGCGGC 7265 >seq23 Length=202804 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || ||||||||||| ||| | || || || || || Sbjct 5260 ATGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 5319 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| ||||| | ||||| || |||||||| | || || Sbjct 5320 GACACCATCGACAACG-TCAAAGCCAAAATTCAAGACAAGGAAGGAATTCCACCAGATCA 5378 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||| | ||| || ||||| || || || | || || || ||| ||||| Sbjct 5379 ACAACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTGCCGATTACAA 5438 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||| | ||||| ||| | || || ||| Sbjct 5439 CATCCAAAAAGAATCCACGCTCCATCTCGTTCTCCGT 5475 >seq933 Length=173040 Score = 116 bits (128), Expect = 4e-21 Identities = 170/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 ||| || | |||||||| ||||| ||||| | || ||||||||||||||| | || || Sbjct 29004 TTTGAACAGATGCAAATTTTCGTGAAAACATTGACTGGCAAAACCATCACCCTTGAGGTG 29063 Query 38295 GAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCC 38353 ||| | || | | | | |||| |||||| || |||| ||||| || || ||||| Sbjct 29064 GAGAGTTCTGATACCATAGACAACG-TTAAAGCTAAGATCCAAGACAAGGAAGGGATTCC 29122 Query 38354 CGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413 | || || || |||| || | || || ||||| |||| || | |||||||| Sbjct 29123 ACCAGATCAGCAAAGGCTTATCTTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGC 29182 Query 38414 CGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||||||||||||||| | || || || | |||||||| || || |||||| Sbjct 29183 GGATTACAACATCCAAAAGGAGTCCACCCTTCACCTTGTGCTGCGGTTAAGGGGCGGC 29240 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || | || || |||||||||||| | || || || || || Sbjct 29241 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 29300 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | || |||| ||||||||||| || || | || || Sbjct 29301 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 29360 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || || || || || | | ||||| || |||||| Sbjct 29361 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 29420 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || ||||||||||| | |||||||| || Sbjct 29421 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGG 29467 >seq1039 Length=240209 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| |||||||| |||| || ||| | Sbjct 129530 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCA 129471 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| | || || | || || || || || || | ||||| Sbjct 129470 GATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCACCAGACCAG 129411 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| || || || |||||||| |||| ||| ||||| || ||||| Sbjct 129410 CAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGACGGGCGTACCCTTGCTGATTACAAT 129351 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| | ||||| ||||||||||| ||| Sbjct 129350 ATCCAAAAGGAGTCCACGCTCCATTTGGTGCTCCGT 129315 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || || || || || || | || || ||| | | Sbjct 129074 ATGCAGATTTTCGTGAAAACTCTTACCGGTAAGACAATAACTTTGGAGGTTGAGAGCTCA 129015 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || | || || | || || |||||||||||| | || || Sbjct 129014 GACACGATTGACAATG-TGAAGGCTAAGATACAGGATAAGGAGGGAATTCCCCCGGATCA 128956 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | |||| || || || ||||| || || | || ||| | || ||||| Sbjct 128955 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCCGTACCTTGGCTGATTACAA 128896 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || || ||| |||| || |||||||| || || Sbjct 128895 CATCCAGAAGGAATCCACCCTTCATCTGGTCCTTCGTTTGAGGGGAGG 128848 >seq520 Length=294854 Score = 111 bits (122), Expect = 2e-19 Identities = 392/603 (65%), Gaps = 16/603 (3%) Strand=Plus/Plus Query 132892 AAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTC 132951 || |||||||| || ||||| | || ||||| | ||||| || ||||| ||||| Sbjct 262090 AAACAAGCAAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTT 262149 Query 132952 AAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAG 133011 || || ||||| | || |||||||| |||||||| || | |||||| || || || Sbjct 262150 AAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTACCGGAGAAA 262209 Query 133012 AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG 133071 || | || || || || ||||| || | | || | || || | || Sbjct 262210 AATATACCTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAA--TGAATCAGATGAAT 262267 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGCACGGCATCGTTTCGATGG 133129 ||||||| || ||||| || || |||||| | | || || ||||| || || | Sbjct 262268 -CGATCCATTTCATAGCCCAATCAGC--TTTCTTGGCAATACAAGGAATCGTGTCAATTG 262324 Query 133130 CGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACG---TAGGTGTCGATGAGGGTCG 133186 | | || ||||| |||| ||| ||| | || || || || | | Sbjct 262325 CATGAAATAAACGA---TTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGAC 262381 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 ||||||||| || || | ||| || || ||||| || || ||||||||| || |||| Sbjct 262382 TATACATTTCAGAATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCT 262441 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGC 133306 | || || ||||||| ||| | || | ||||| || ||| || |||||| Sbjct 262442 CAGAGACTTGAACTTCTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGG 262501 Query 133307 TGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCT 133366 |||||| || || || || ||||| |||||| || || ||| |||| | | | | Sbjct 262502 AGGCGGCAAAGAAAGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGT 262561 Query 133367 CCCAGTCGCGCGTGTCCTTG-GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 ||||| | | | |||| || || || || || || | ||||| || || || ||| Sbjct 262562 TCCAGT-GAGGAAGATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCG 262620 Query 133426 GCTTTTTTGTACATACTCCACATGTCCGAATATTGTAT-GGGAAAAATCACAAACCGGCG 133484 |||||||||||||| ||| || | | ||||| || ||||| | || |||| | | Sbjct 262621 GCTTTTTTGTACATTTCCCAAATTTTAGGGTATTGAATCGGGAACATACAGAAACGGTCA 262680 Query 133485 GGG 133487 ||| Sbjct 262681 GGG 262683 >seq37 Length=1182629 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| || || ||||||||| | || || || | | Sbjct 293129 ATGCAAATCTTCGTGAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 293070 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| ||||| || |||||||| | || || Sbjct 293069 GACACCATCGACAACG-TCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCA 293011 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| || || ||| |||| |||| | || || || ||||| Sbjct 293010 GCAACGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGAAGGACTCTTGCTGATTACAA 292951 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | ||||| ||| | || || ||| || | || || Sbjct 292950 CATCCAGAAGGAGTCCACGCTTCATCTTGTTCTCCGTCTGCGTGGAGG 292903 >seq322 Length=397916 Score = 104 bits (114), Expect = 2e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 ||| || | |||||||| ||||| ||||| | || || |||||||||||| | || || Sbjct 312994 TTTGAACAGATGCAAATTTTCGTGAAAACATTGACCGGTAAAACCATCACCCTTGAGGTG 312935 Query 38295 GAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 ||| | || | | | | | |||||| || |||| ||||| || || ||||| Sbjct 312934 GAGATTTCTGATACCATAGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCA 312875 Query 38355 GCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414 | || || || |||| || | || || ||||| | || || | |||||||| Sbjct 312874 CCTGATCAGCAAAGGCTTATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGCG 312815 Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||||||||||||||| | || || || | |||||||| || || |||||| Sbjct 312814 GATTACAACATCCAAAAGGAGTCCACCCTTCACCTTGTGCTGCGGTTAAGGGGCGGC 312758 Score = 100 bits (110), Expect = 3e-16 Identities = 166/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 ||| || | |||||||| ||||| ||||| | | ||| |||||||||||| | || | Sbjct 334103 TTTGAACAGATGCAAATTTTCGTGAAAACATTGATGGGTAAAACCATCACCCTTGAGGCG 334044 Query 38295 GAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCC 38353 ||| | || | | | | |||| |||||| || |||| ||||| || || ||||| Sbjct 334043 GAGAGTTCTGATACCATAGACAACG-TTAAAGCTAAGATCCAAGACAAGGAAGGGATTCC 333985 Query 38354 CGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413 | || || || |||| || | ||| || ||||| | || || | |||||||| Sbjct 333984 ACCTGATCAGCAAAGGCTTATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGC 333925 Query 38414 CGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||||||||||| | || || || | ||| |||| || ||||| || Sbjct 333924 AGATTACAACATCCAAAAGGAGTCCACCCTTCACCTTGTGTTGCGGTTAAGAGGTGG 333868 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || | || || |||||||||||| | || || || || || Sbjct 312757 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 312698 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | || |||| ||||||||||| || || | || || Sbjct 312697 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 312638 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || || || || || | | ||||| || |||||| Sbjct 312637 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 312578 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || ||||||||||| | |||||||| || Sbjct 312577 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGG 312531 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || | || ||||||| |||||| | || || || || | Sbjct 333866 ATGCAGATATTCGTTAAGACCTTGACTGGCAAAATTATCACCCTTGAGGTTGAATCCTCA 333807 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | || |||| ||||||||||| || || | || || Sbjct 333806 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 333747 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || || || || || | | ||||| || |||||| Sbjct 333746 CAGTGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 333687 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || |||||||| || | |||||||| || Sbjct 333686 ATCCAGAAGGAATCTACCCTTCATTTGGTTCTTAGATTGAGAGGTGG 333640 >seq78 Length=963227 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| ||||| || || || || || || ||| |||| || ||| | Sbjct 604862 AAAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTCGAGGTTGAGTC 604803 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | |||| || |||| ||||| || |||||||| | || Sbjct 604802 TTCTGACACAATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCTGA 604743 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || ||||| | ||| || || ||| | || || | ||||| ||| |||||| Sbjct 604742 CCAGCAACGTCTCATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTCGCCGACTA 604683 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| |||||| | || || || | || || ||| Sbjct 604682 CAACATCCAGAAGGAATCAACTCTTCACCTTGTTCTCCGT 604643 >seq1740 Length=56962 Score = 102 bits (112), Expect = 8e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 38236 TTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 38295 ||| | | |||||||| || || || || ||||| || |||||||| || |||| || | Sbjct 21429 TTATATAGATGCAAATCTTTGTCAAGACCCTCACTGGTAAAACCATTACTCTCGAAGTTG 21488 Query 38296 AGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCG 38355 || | || | | | | | |||||| || || | || || || || || || Sbjct 21489 AGAGTTCTGATACCATAGACAATGTTAAAGCCAAGATTCAAGATAAGGAAGGGATCCCAC 21548 Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 | ||||| ||||| || |||| || || || ||| |||| || | ||| ||||| | Sbjct 21549 CAGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGTTGGAGGATGGGCGTACCCTTGCTG 21608 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | ||||||||||||||||| | || || ||||||||||| ||| Sbjct 21609 ATTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGT 21652 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || |||||||| || || | || || ||| | | Sbjct 43225 ATGCAGATTTTTGTGAAGACCCTTACAGGCAAAACAATTACTTTGGAGGTTGAGAGCTCA 43166 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | ||||| ||||| || || | ||||| Sbjct 43165 GACACAATTGACAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATCCCTCCAGACCAG 43106 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||||| || || |||||| |||| || | || ||| | ||| |||||| Sbjct 43105 CAGAGGCTCATTTTTGCCGGAAAACAGTTGGAAGATGGCCGAACCTTGGCCGATTACAAC 43046 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || ||| | || || |||||||| ||||| Sbjct 43045 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGCGG 42999 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || |||||||| | || || ||| | Sbjct 22121 ATGCAAATCTTTGTGAAGACCTTGACAGGGAAGACCATCACTTTGGAGGTTGAGAGTTCA 22180 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || |||| ||||| ||||| ||||| | ||||| Sbjct 22181 GACACAATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 22240 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | ||||||| ||| || || ||||| || || | || ||| | || |||||| Sbjct 22241 CAGAGACTCATTTTCGCTGGGAAGCAGCTTGAAGATGGCCGTACCTTGGCTGATTACAAC 22300 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || ||| | || || |||||||| || || Sbjct 22301 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGG 22347 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | || ||||| || | |||| || || |||||| |||| Sbjct 21986 GACAAGGAGGGTATTCCCCCAGATCAACAAAGGTTGATTTTTGCCGGGAAACAGTTGGAA 22045 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | || ||| | || ||||||||||| |||||| | || || ||| | || || Sbjct 22046 GATGGCCGGACCTTGGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTT 22105 Query 38457 CGTTTGAGAGGCGGC 38471 |||||||| || ||| Sbjct 22106 CGTTTGAGGGGAGGC 22120 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || ||||| || | || || |||||||| || | || || ||| | Sbjct 42997 ATGCAGATTTTTGTAAAGACATTGACAGGGAAAACCATTACTTTGGAGGTTGAGAGTTCA 42938 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | |||| || |||| ||||| ||||| ||||| | ||||| Sbjct 42937 GACACGATTGACAATG-TAAAAGCTAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCA 42879 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | |||| || || || ||||| || || | || || | || ||||| Sbjct 42878 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACATTGGCTGATTACAA 42819 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | || || ||| | || || |||||||| || ||| Sbjct 42818 CATCCAGAAGGAATCTACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGC 42770 >seq1642 Length=65368 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| |||||||| |||| || ||| | Sbjct 53934 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCA 53993 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| | || || | |||||||| || ||||| | |||||| Sbjct 53994 GATACCATAGACAATGTTAAGGCCAAGATTCAGGACAAAGAAGGCATTCCACCAGACCAA 54053 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || || |||||||| || || | || || | || |||||| Sbjct 54054 CAGAGGCTCATCTTTGCTGGAAAACAGCTTGAGGATGGTCGGACTTTAGCTGATTACAAC 54113 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || || || | || || ||||||||||| ||| Sbjct 54114 ATTCAGAAAGAGTCTACCCTCCATTTGGTGCTCCGT 54149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500001340764160