Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1210 172 7e-38 seq520 149 8e-31 seq662 123 3e-23 seq1159 96.9 4e-15 seq31 95.1 2e-14 seq309 93.3 5e-14 seq428 89.7 6e-13 >seq1210 Length=122563 Score = 172 bits (190), Expect = 7e-38 Identities = 382/565 (68%), Gaps = 11/565 (2%) Strand=Plus/Plus Query 102060 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGT 102119 ||||| || ||| | ||||||||| | | ||| | || || |||| |||| ||| Sbjct 42565 TATATCAATGATTCAGTTGAGAAGAATCGTTTGTTTCATGCAATTGAAACGATTCCTTGT 42624 Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCT 102179 ||| ||||||||| |||||||||||||| ||| | ||| || || ||| |||||| Sbjct 42625 ATTACAAAGAAAGCTGATTGGGCTATGAAATGGATCGATTCA---TCTGATTCATTTGCT 42681 Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 || | || | || ||||| |||||||| ||||| || |||||||| ||||| || Sbjct 42682 GAAAGGATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTCTCTGGAAGTTTCTGTGCA 42741 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 |||| ||||| || || || ||| | ||||| ||| | || || ||||||||||| Sbjct 42742 ATTTTCTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAACGAGCTTATT 42801 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGGAACTTTTCAAATTATTGCGTA 102357 || |||||||| ||||| || || ||||| | | || | ||| | ||| | | Sbjct 42802 TCACGTGACGAAGGACTTCATTGTGATTTTGCTTGTTTGATTTATTC--GCTTTTGAGAA 42859 Query 102358 TTAAAC-CAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAG 102416 |||| | ||| ||| | | | | ||||| || || |||||||| |||| Sbjct 42860 AGAAACTTAGCGA-AGAGCGTGTGAAGACGATTGTGCGCGATGCTGTTGAGATCGAGAGA 42918 Query 102417 GGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCC 102476 | ||| | | || || ||||| |||||| | | || |||||| ||| |||| Sbjct 42919 GAATTTGTTTGCGAAGCGCTTCCTTGCGCTTTAGTTGGAATGAATGGTGATTTGATGAGT 42978 Query 102477 GAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGG-GGTGCCTCCAATTTG 102535 | |||||||||| ||| |||||||||||||| || | || ||| ||||| Sbjct 42979 CAGTATATTGAGTTTGTTGCTGATAGATTGTTGTGTGAGCTTGGTTGTG-GGAAAATTTA 43037 Query 102536 GAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTT 102595 || ||||||| ||||| | ||||| ||| || | ||||| || ||||| Sbjct 43038 TAATGTTCAGAATCCTTTTGATTGGATGGATTTGATTTCGCTTCAGGGGAAAACTAACTT 43097 Query 102596 CTTCGAAAAGAGGGTTGGGGACTAT 102620 || || ||| | ||||| || ||| Sbjct 43098 TTTTGAGAAGCGCGTTGGCGAGTAT 43122 >seq520 Length=294854 Score = 149 bits (164), Expect = 8e-31 Identities = 341/510 (67%), Gaps = 5/510 (1%) Strand=Plus/Minus Query 102112 TTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT 102171 |||| |||||| |||||||| |||||||||||||| ||| | ||| || || || Sbjct 262312 TTCCTTGTATTGCCAAGAAAGCTGATTGGGCTATGAAATGGATCGATTCA---TCTGATT 262256 Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 | |||||||| || || | || ||||| |||||||| ||||| || ||||| ||| | Sbjct 262255 CATTTGCTGAAAGAATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTCTCCGGTAGTT 262196 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 |||| | |||| |||||| || || || ||| | ||||| ||| | || || |||| Sbjct 262195 TCTGTTCAATTTTTTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAACG 262136 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTAT 102351 ||||||| || |||||||| || || || || ||||| ||||| | | Sbjct 262135 AGCTTATTTCACGTGACGAAGGTCTTCATTGTGATTTTGCTTGTTTACTTTATTCGCTTT 262076 Query 102352 TGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTG 102411 || | | |||| | ||| | | | |||||||| || || ||||| |||| Sbjct 262075 TGAGAAAGAAACTTAGTGAAGAGCGTGTGAAAACTATTGTTCGTGATGCGGTTGAAATTG 262016 Query 102412 AGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGA 102471 ||| | ||| | | || || ||||| || ||| | | || ||||| ||| || Sbjct 262015 AGAGAGAATTTGTTTGTGAAGCGCTTCCTTGTGCTTTGGTTGGAATGAACGGTGATTTGA 261956 Query 102472 TGTCCGAATATATTGAGTATGTATCTGATAGATTGTT-GAAGCAGATCGGGGTGCCTCCA 102530 || |||||||||||| ||| |||||||||| || | | | | | ||| | Sbjct 261955 TGAGTCAATATATTGAGTTTGTTGCTGATAGATTATTGGGTGAACTTGGTTGTG-GAAAA 261897 Query 102531 ATTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACA 102590 |||| || ||||||| ||||| | ||||| ||| || | ||||| || Sbjct 261896 ATTTATAATGTTCAGAATCCTTTTGATTGGATGGAATTGATTTCACTTCAGGGGAAAACT 261837 Query 102591 AACTTCTTCGAAAAGAGGGTTGGGGACTAT 102620 ||||| || || ||| | |||||||| ||| Sbjct 261836 AACTTTTTTGAGAAGCGCGTTGGGGAATAT 261807 >seq662 Length=244491 Score = 123 bits (136), Expect = 3e-23 Identities = 305/459 (66%), Gaps = 8/459 (2%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || ||| | | || ||||| || ||||||| | || || | ||||| Sbjct 188832 TCAAGAATGTCAGCCCTGTTGGTTGCTGCAATGACAATGACCCCGGTATTACCCTCAAAT 188773 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| ||||||||||| ||||| | || ||||| | |||||| ||| || | Sbjct 188772 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCGTTCCCT---CCA 188716 Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 ||| |||| | |||||| ||||||| |||||||| ||||||| || || || || Sbjct 188715 CCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACAA 188656 Query 16095 GGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 16154 || ||| || || | || | ||| || || || || || ||||| ||| Sbjct 188655 GGAGCATTCTCTTTGGCTTTCTTGAATAAATCACGAACTCGAGAAGCACCAACACCGACA 188596 Query 16155 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 16213 |||||||| ||||| | | | | | |||| || || |||||| | ||||||||| Sbjct 188595 AACATCTCAACAAACTCAGAACCAG-AGATTGAGAAAAACGGGACACCTGCTTCACCCGC 188537 Query 16214 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCG 16273 ||| || ||| | || |||||||| || ||||| ||| |||| || | ||| Sbjct 188536 AATAGCCTTGGCTAATAGCGTCTTACCAGTCCCTGGGGGACCAACGAGAAGAACTCCTTT 188477 Query 16274 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 ||| || || || | || | | ||||| || | || ||||| || || | ||| Sbjct 188476 TGGTATGCGAGCCCCGATAGCAGTGAACCTCTCGGGCTTTTTCAGAAACTCGACTACCTC 188417 Query 16334 TTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 || || | |||||| | || | ||| ||||||| Sbjct 188416 CATAAAATCCTGTTTGGCTTCATCTACCCCAGCAACATC 188378 >seq1159 Length=130826 Score = 96.9 bits (106), Expect = 4e-15 Identities = 120/162 (74%), Gaps = 8/162 (5%) Strand=Plus/Minus Query 184557 TTGGAATA--GGTGCAAATGATGTTGCCAATGCATTCGCAACATCAGTTGGATCAGGTGC 184614 |||||| | ||||| ||||||||||| |||||| | | ||| ||||||||||| ||||| Sbjct 85057 TTGGAACATTGGTGCTAATGATGTTGCAAATGCAATGGGAACTTCAGTTGGATCTGGTGC 84998 Query 184615 TTTGAAAGTTAAGCACGCAG---TGCCACTCGCGGCTGTGTGTGAGTTTTCGGGGTCTCT 184671 |||| | ||| ||| || | || || || || |||| || ||||| ||| | | Sbjct 84997 ATTGACACTTAGGCAAGCTGTCTTGACA---GCTGCAGTGTTAGAATTTTCAGGGGCATT 84941 Query 184672 GTTTATGGGAAGTCATGTCGTAAAAACAATACGAAAAGGAAT 184713 ||| ||||||| ||||||| || ||||| | ||||| || Sbjct 84940 GTTGATGGGAACTCATGTCACAAGCACAATGCAGAAAGGGAT 84899 >seq31 Length=1468034 Score = 95.1 bits (104), Expect = 2e-14 Identities = 223/335 (67%), Gaps = 4/335 (1%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || ||| | ||| || || || || |||| || ||| || | | ||| Sbjct 1355830 ATCAAGAATTTCAGGTCTATTAGTAGCAGCAATAACAATAACACCAGTATTACCACTAAA 1355771 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| || ||||| | ||| || | |||||||| | ||||||||| || Sbjct 1355770 ACCATCCATTTCAGTCAACAACTGATTCAATGTTTGTTCTCTTTCATCATTTCCTCCACC 1355711 Query 16037 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 16096 | ||| | || | || |||| || ||||||||||||||||| || | | || || Sbjct 1355710 AATACCTGTACCTCTCTGTCTTCCAACAGCATCAATCTCATCAATAAATATCAAACACGG 1355651 Query 16097 TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACA 16154 | |||||| || | ||| | ||| | | || |||| || || ||||||||| Sbjct 1355650 TGAATTTTCTTTCGCCTTATTAAACAAATCTCTT--ACTCTTGAAGCACCAACACCAACA 1355593 Query 16155 AACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCA 16214 |||||||| | || | || | || || | ||| || || || | ||| || ||| Sbjct 1355592 AACATCTCAATGAATTCTGAACCTGATAATGAAAAGAATGGAACTTTTGCTTCTCCTGCA 1355533 Query 16215 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || ||| || || || ||||| || || || || Sbjct 1355532 ATTGCTTTTGCTAGTAGTGTCTTTCCTGTCCCAGG 1355498 >seq309 Length=414593 Score = 93.3 bits (102), Expect = 5e-14 Identities = 195/286 (68%), Gaps = 20/286 (7%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||||||||| ||||| || ||||||| ||||||||| | Sbjct 386824 AAATCCATCCATCTCAGTCAAAAGCTGATTAATTGTCTGTTCCCTCTCATCATTCCC--- 386880 Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 |||| ||||||| | || | || || |||||||| |||||||| || || || Sbjct 386881 ACCACCAAGTCCAGCACCCCTCTGTCTCCCAACAGCATCAATTTCATCAATAAACACAAT 386940 Query 16091 GCATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGC 16143 ||| || | || ||| || ||||| | ||||| || || || | || | Sbjct 386941 GCAAGGCGCCTTCGACTTT-----GCCTTCTCAAACAAATCCC-TA-ACCCTAGAAGCAC 386993 Query 16144 CCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAG 16203 | ||||||||||||| |||||||| | | || | ||| | ||| || ||| || Sbjct 386994 CAACACCAACAAACAATTCCACAAACTCCGAAGCCGCACACGAAAAGAACGGTACACCAG 387053 Query 16204 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||| || |||| || | || | || ||||| || || || || Sbjct 387054 CTTCCCCGGCAACCGCCCTCGCTAATAGTGTCTTTCCGGTTCCCGG 387099 >seq428 Length=334874 Score = 89.7 bits (98), Expect = 6e-13 Identities = 143/202 (71%), Gaps = 10/202 (5%) Strand=Plus/Plus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 ||||| |||||||| ||||||||||| ||||| | || ||||| | ||| |||||| || Sbjct 182777 TCAAATCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCGTCATTCCCT 182836 Query 16032 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 |||| || | | | ||| |||| || |||||||| ||||||| ||||| Sbjct 182837 ---CCACCAATTCCCGTCCCTCTTTGTCTTCCAACAGCATCAATTTCATCAACAAAGACA 182893 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCA 16146 || || || ||| || ||| |||| || | ||| || ||||| || || | Sbjct 182894 ATACAAGGAGCATTCTCTTTAGC--CTTCTTGAACAAATCACGGACACGAGAAGCACCAA 182951 Query 16147 CACCAACAAACATCTCCACAAA 16168 ||||||||||||||| ||||| Sbjct 182952 TACCAACAAACATCTCAACAAA 182973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620529609505280