Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1322 84.2 3e-11 seq1210 84.2 3e-11 >seq1322 Length=106565 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 84717 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 84662 >seq1210 Length=122563 Score = 84.2 bits (92), Expect = 3e-11 Identities = 137/195 (70%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT--- 119552 ||||| || |||||| ||||| || || || || ||||| || |||| ||||| Sbjct 42833 GCAAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTT--TGAA--AAAGTTAA 42778 Query 119553 -CCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAA 119611 |||||||| | || | ||| || ||||| || || ||||| ||||||||||| || || Sbjct 42777 ACCAGGCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAGAAAAA 42718 Query 119612 GATGCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAA 119671 || || || ||||| || ||||| | | | |||||||| | ||| |||| Sbjct 42717 TATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGAATCGAT 42658 Query 119672 CCACTTGAGAGCCCA 119686 ||| || | |||||| Sbjct 42657 CCATTTCATAGCCCA 42643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588774099027200