Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq662 141 1e-28 seq31 105 8e-18 seq309 100 3e-16 seq428 93.3 5e-14 >seq662 Length=244491 Score = 141 bits (156), Expect = 1e-28 Identities = 309/459 (67%), Gaps = 8/459 (2%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || ||| | | || || || || ||||||| | || || | | ||||| Sbjct 188832 TCAAGAATGTCAGCCCTGTTGGTTGCTGCAATGACAATGACCCCGGTATTACCCTCAAAT 188773 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||||||||||||| | || ||||| | |||||| ||| || | Sbjct 188772 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCGTTCCCTCC---A 188716 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| |||| | |||||| ||||||| |||||||| ||||||| || |||||||| Sbjct 188715 CCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACAA 188656 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||| || ||| | | || | ||| ||||| | || || ||||| ||| Sbjct 188655 GGAGCATTCTCTTTGGCTTTCTTGAATAAATCACGAACTCGAGAAGCACCAACACCGACA 188596 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | |||| || || |||||| | ||||||||| Sbjct 188595 AACATCTCAACAAACTCAGAACCAG-AGATTGAGAAAAACGGGACACCTGCTTCACCCGC 188537 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| || ||| | || |||||||| || ||||| ||| |||| || | || Sbjct 188536 AATAGCCTTGGCTAATAGCGTCTTACCAGTCCCTGGGGGACCAACGAGAAGAACTCCTTT 188477 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 ||| || || || | || | | ||||| || | || ||||| || || | ||| Sbjct 188476 TGGTATGCGAGCCCCGATAGCAGTGAACCTCTCGGGCTTTTTCAGAAACTCGACTACCTC 188417 Query 9641 TTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 || || | |||||| | || | ||| ||||||| Sbjct 188416 CATAAAATCCTGTTTGGCTTCATCTACCCCAGCAACATC 188378 >seq31 Length=1468034 Score = 105 bits (116), Expect = 8e-18 Identities = 223/333 (67%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || ||| | ||| || || || || |||| || ||| || | | | ||| Sbjct 1355830 ATCAAGAATTTCAGGTCTATTAGTAGCAGCAATAACAATAACACCAGTATTACCACTAAA 1355771 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| || ||||| | || || | |||||||| | ||||||||| || Sbjct 1355770 ACCATCCATTTCAGTCAACAACTGATTCAATGTTTGTTCTCTTTCATCATTTCCTCCACC 1355711 Query 9344 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGG 9403 | ||| | || | || |||| || ||||||||||||||||| || | | ||| || Sbjct 1355710 AATACCTGTACCTCTCTGTCTTCCAACAGCATCAATCTCATCAATAAATATCAAACACGG 1355651 Query 9404 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAA 9463 | |||||| || | | ||| | ||| | || ||| || || ||||||||||| Sbjct 1355650 TGAATTTTCTTTCGCCTTATTAAACAAATCTCTTACTCTTGAAGCACCAACACCAACAAA 1355591 Query 9464 CATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAAT 9523 |||||| | || | || | || || | ||| || || || | ||| || ||||| Sbjct 1355590 CATCTCAATGAATTCTGAACCTGATAATGAAAAGAATGGAACTTTTGCTTCTCCTGCAAT 1355531 Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| || || || ||||| || || || || Sbjct 1355530 TGCTTTTGCTAGTAGTGTCTTTCCTGTCCCAGG 1355498 >seq309 Length=414593 Score = 100 bits (110), Expect = 3e-16 Identities = 252/379 (66%), Gaps = 18/379 (5%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| |||||||| || ||||| || ||||||| ||||||||| | Sbjct 386824 AAATCCATCCATCTCAGTCAAAAGCTGATTAATTGTCTGTTCCCTCTCATCATTCCC--- 386880 Query 9341 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAAT 9397 |||| ||||||| | || | || || |||||||| |||||||| || ||||| Sbjct 386881 ACCACCAAGTCCAGCACCCCTCTGTCTCCCAACAGCATCAATTTCATCAATAAACACAAT 386940 Query 9398 ACATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCC 9452 || || | || ||| || | ||||| | ||| | |||||| || || Sbjct 386941 GCAAGGCGCCTTCGACTTT-----GCCTTCTCAAACAAATCCCTAACCCTAGAAGCACCA 386995 Query 9453 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 9512 ||||||||||||| |||||||| | | || | ||| | ||| || ||| || | Sbjct 386996 ACACCAACAAACAATTCCACAAACTCCGAAGCCGCACACGAAAAGAACGGTACACCAGCT 387055 Query 9513 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 9572 || || |||| || | || | || ||||| || || || || | ||| | | Sbjct 387056 TCCCCGGCAACCGCCCTCGCTAATAGTGTCTTTCCGGTTCCCGG-TGGCCCAACCAAAAG 387114 Query 9573 GCACCCCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATC 9631 ||||| | |||||||| || || || ||| | ||||| | ||| | ||||| Sbjct 387115 ACACCCTTTAGGAATCTTAGCACCTAAAGCAGTGTACTTATCAGGATTCTTCAAGAAATC 387174 Query 9632 CACAATCTCTTCCAATTCA 9650 |||| |||| |||||| Sbjct 387175 AACAACTTCTTGTAATTCA 387193 >seq428 Length=334874 Score = 93.3 bits (102), Expect = 5e-14 Identities = 156/224 (70%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 9258 ACAACAAT---ACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 |||||||| ||| || | | ||||| |||||||| ||||||||||||||||| | Sbjct 182753 ACAACAATGACACCGGTATTACCCTCAAATCCATCCATTTCTGTCAAAAGTTGGTTGAGG 182812 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCACG 9371 || ||||| | ||| |||||| || |||| || | | | ||| |||| || Sbjct 182813 GTCTGTTCTCTTTCGTCATTCCCT---CCACCAATTCCCGTCCCTCTTTGTCTTCCAACA 182869 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||| ||||||| ||||||||||| || ||| || || | | || | | Sbjct 182870 GCATCAATTTCATCAACAAAGACAATACAAGGAGCATTCTCTTTAGCCTTCTTGAACAAA 182929 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || || || | || || | ||||||||||||||| ||||| Sbjct 182930 TCACGGACACGAGAAGCACCAATACCAACAAACATCTCAACAAA 182973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589778554581760