Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq2319 343 2e-89 seq432 343 2e-89 seq1296 138 1e-27 seq200 136 5e-27 seq134 114 2e-20 seq2286 113 6e-20 seq1196 113 6e-20 seq5156 107 2e-18 seq2312 107 2e-18 seq814 107 2e-18 seq686 104 3e-17 seq318 104 3e-17 seq1868 102 1e-16 seq2162 98.7 1e-15 seq81 95.1 1e-14 seq1318 91.5 2e-13 seq260 89.7 6e-13 seq177 89.7 6e-13 seq485 87.8 2e-12 seq145 87.8 2e-12 seq3832 82.4 9e-11 seq1943 82.4 9e-11 seq264 82.4 9e-11 >seq2319 Length=57875 Score = 343 bits (380), Expect = 2e-89 Identities = 432/593 (73%), Gaps = 0/593 (0%) Strand=Plus/Minus Query 180147 CCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCT 180206 ||||| || || || |||| || ||| | |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 180207 GACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAG 180266 || | ||||| || || || ||||| || ||||||| ||| |||| || || || ||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 180267 CACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCA 180326 || || || || ||||| || || |||||| | || ||||| ||||| |||||||| || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 180327 CTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAA 180386 || ||| || ||||||||||| |||| || ||| || | | ||||| || ||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 180387 ACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTT 180446 | ||| || ||| | ||||||| || |||||||| ||||| ||||| || || || Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 180447 GCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGT 180506 ||||| ||||| || || || || |||||||||| || || ||||||||||| ||| Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 180507 TCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGC 180566 || | || |||||||| || || |||||||| || || |||||||| || || | || Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 180567 GTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGT 180626 | || || ||||| ||||| | || || || || || ||||| ||| || ||||| | Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCT 18103 Query 180627 CAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAA 180686 ||||||||||| | ||||| ||||| || | | ||||| ||| || ||||||||| Sbjct 18102 CAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 18043 Query 180687 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGA 180739 |||||||| || ||||| ||||| || ||||| || ||||| || || | ||| Sbjct 18042 GTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 343 bits (380), Expect = 2e-89 Identities = 398/534 (75%), Gaps = 2/534 (0%) Strand=Plus/Plus Query 181640 CATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAA 181699 |||||| | | |||| |||||||||||||| ||||| ||||| ||| ||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 181700 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATG 181759 | || || || ||| ||||||| || || ||||| || |||| | || ||||||||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 181760 CTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCTTT 181818 | | ||||||||||||||||| ||| || | | || || || ||||| || || || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCA-ATTGCGGCCTTATAATGCAATCGCATT 47668 Query 181819 TTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAG 181878 |||||||| |||||||| || || |||||||| || || ||||| ||||| || || | Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 181879 TTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCA 181938 |||||||||||| || ||||| ||||| || || || || || ||| ||||||| |||| Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCA 47788 Query 181939 GGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGG 181998 || |||||||||||||| | || || || ||||||||||| ||||||||| | |||| Sbjct 47789 AGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGG 47848 Query 181999 TGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGG 182058 | ||| || | | || ||||| || | ||||| || ||||| | | | |||| || Sbjct 47849 CGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGG 47908 Query 182059 TGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAAT 182118 || |||||||| ||| || || | |||| |||| |||||||| |||||||| Sbjct 47909 GGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAAT 47968 Query 182119 GGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAA 182172 ||| || || |||||||| ||||| || ||||| || |||| ||| |||||| Sbjct 47969 GGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 138 bits (152), Expect = 1e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 180200 ATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCA 180259 ||| || || | ||||| || || || ||||| || ||||||| ||| |||| || || Sbjct 75581 ATTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCA 75522 Query 180260 AGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGG 180319 || ||||| || || || ||||| || || |||||| | || ||||| ||||| ||||| Sbjct 75521 GGCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGG 75462 Query 180320 CGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAAC 180379 ||| || || ||| || ||||||||||| |||| || ||| || | | ||||| Sbjct 75461 CGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAAC 75402 Query 180380 CACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCT 180435 || |||| ||| || ||| | ||||||| || |||||||| ||||| |||| Sbjct 75401 TACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCT 75346 >seq200 Length=959787 Score = 136 bits (150), Expect = 5e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 182192 ATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCT 182251 ||| | ||||| || || | ||| | |||| ||| | | || | | ||||| || Sbjct 265389 ATGTTATTTGTCCCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCC 265330 Query 182252 CTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAG 182311 || ||||| ||||| |||||||| || || ||||||||| | ||| | ||||| || || Sbjct 265329 CTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 265270 Query 182312 TTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCA 182371 || ||||| |||||||| || || |||||||| || |||||| | ||||| ||| | || Sbjct 265269 TTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCG 265210 Query 182372 CCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACC 182421 | ||||| || ||||| ||| || | ||||||||||| || |||| Sbjct 265209 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 265160 >seq134 Length=619377 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171912 GACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGTTCC 171971 || || ||||| | || || ||||| ||||||||| |||||||||||||| || || Sbjct 606825 GATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGCCGTGCCGGTGCATGCTCT 606766 Query 171972 AGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTTGAT 172031 | ||||||||| || ||| |||| | || |||||||| || || || |||||| Sbjct 606765 ACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTGGATCAGTCTGATGGTTCATTTCTTGAT 606706 Query 172032 GATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCGATTGT 172091 || | ||||||||| | ||| | || || |||||||| || ||||| || |||||| Sbjct 606705 GACGGTCAAATGGAGGAAGGCTATGTGCTAACCTGTGTGGCGTATCCAACTTCAGATTGT 606646 Query 172092 GTT 172094 ||| Sbjct 606645 GTT 606643 >seq2286 Length=21248 Score = 113 bits (124), Expect = 6e-20 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 182091 CAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCT 182150 |||| |||| |||||||| ||||||||||| || || |||||||| ||||| || |||| Sbjct 6815 CAACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCT 6756 Query 182151 TCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTA 182210 | || |||| ||| |||||| | ||||| |||||||||||| | ||||| || || | Sbjct 6755 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAA 6696 Query 182211 TGGGTCTTTGGA 182222 |||| | |||| Sbjct 6695 CGGGTTTATGGA 6684 >seq1196 Length=183224 Score = 113 bits (124), Expect = 6e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 182066 GCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACA 182125 |||||||| ||| || || | |||| |||| |||||||| ||||||||||| || Sbjct 19745 GCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACC 19686 Query 182126 GCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCAT 182185 || |||||||| ||||| || ||||| || |||| ||| |||||| | ||||| ||| Sbjct 19685 GCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACAT 19626 Query 182186 TTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGA 182222 ||||||||| | ||||| | || | |||| | |||| Sbjct 19625 TTCTTTATGTTATTTGTCCGAGTAACGGGTTTATGGA 19589 >seq5156 Length=1562 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 182091 CAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCT 182150 |||| |||| |||||||| |||||| |||| || || |||||||| ||||| || |||| Sbjct 923 CAACCCAAGCGGAAGAAACTTATTCAGTGGTCACCGCTAACCGCTTATGGTCCCAAATCT 864 Query 182151 TCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTA 182210 |||| |||| ||| |||||| | ||||| |||||||||||| | ||||| || | | Sbjct 863 TCGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAATAA 804 Query 182211 TGGGTCTTTGGA 182222 |||| | |||| Sbjct 803 CGGGTTTATGGA 792 >seq2312 Length=20438 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 182091 CAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCT 182150 |||| |||| |||||||| ||||||||||| || || |||||||| ||||| || |||| Sbjct 19763 CAACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCT 19704 Query 182151 TCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTA 182210 | || |||| ||| |||||| | ||||| |||||||||||| | ||||| || || | Sbjct 19703 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAA 19644 Query 182211 TGGGTCTTTGGA 182222 ||| | |||| Sbjct 19643 CAGGTTTATGGA 19632 >seq814 Length=198837 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 182091 CAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCT 182150 |||| ||| |||||||| ||||||||||| || || |||||||| ||||| || |||| Sbjct 115057 CAACCCAAACGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCT 115116 Query 182151 TCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTA 182210 | || |||| ||| |||||| | ||||| |||||||||||| | ||||| || || | Sbjct 115117 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAA 115176 Query 182211 TGGGTCTTTGGA 182222 |||| | |||| Sbjct 115177 CGGGTTTATGGA 115188 >seq686 Length=409839 Score = 104 bits (114), Expect = 3e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 182091 CAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCT 182150 |||| |||| |||||||| ||||||||||| || || |||||||| ||||| || |||| Sbjct 52870 CAACCCAAGTGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCT 52929 Query 182151 TCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTA 182210 | || |||| ||| |||||| | ||||| ||||| |||||| | ||||| || || | Sbjct 52930 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTGTTTATGTTATTTGTCCCAGTAA 52989 Query 182211 TGGGTCTTTGGA 182222 | || | |||| Sbjct 52990 CGAGTTTATGGA 53001 >seq318 Length=400206 Score = 104 bits (114), Expect = 3e-17 Identities = 159/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 180517 TCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCA 180576 ||||| | || || || ||||| || || |||||||| | | | || | || || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 180577 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTG 180636 |||| ||||| | || | || || || ||||| ||| || ||||| ||||||||||| Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 180637 TGCTCAACACTTGGGCAGACGTAC--TCAACCGCGCTGGTCTGGGTATGGAAGTTATGCA 180694 | | ||||||||||| || ||| | ||||| ||| || ||||||||||||||||| Sbjct 349213 TAATTAACACTTGGGCTGA--TACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCA 349270 Query 180695 CGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGA 180739 | ||||| |||| || || || | || || || || | ||| Sbjct 349271 TAAACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 >seq1868 Length=44937 Score = 102 bits (112), Expect = 1e-16 Identities = 94/118 (80%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 182091 CAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCT 182150 |||| |||| |||||||| ||||||||||| || || |||||||| ||||| || |||| Sbjct 39537 CAACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCT 39596 Query 182151 TCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGT 182208 | || |||| ||| |||||| | ||||| |||||||||||| | ||||| || || Sbjct 39597 T-GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 39653 >seq2162 Length=26882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 182091 CAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCT 182150 |||| |||| || ||||| |||||| |||| || || |||||||| ||||| || |||| Sbjct 20874 CAACCCAAGCGGAGGAAACTTATTCATTGGTCACCGCTAACCGCTTTTGGTCCCAAATCT 20933 Query 182151 TCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTA 182210 | || |||| ||| |||||| | ||||| |||||||||||| | ||||| || || | Sbjct 20934 TTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAA 20993 Query 182211 TGGGTCTTTGGA 182222 ||| | |||| Sbjct 20994 CTGGTTTATGGA 21005 >seq81 Length=695010 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 181796 CGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTC--TCTGTATTTC 181853 || || || ||| | || || || ||| |||| |||||||| || | |||||||||| Sbjct 211507 CGGCCTTATAATACAATCGCATTCTCCAGTCCAATTGCTGTTTTATTTCTTCTGTATTTC 211566 Query 181854 TCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGA 181913 || ||||| ||||| || || |||||||||||||| || ||||| ||||| | || | Sbjct 211567 ATATTTATCCACTGGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAACAGCTA 211626 Query 181914 TTTTCCGCTTCCTTCTCTT 181932 | || || ||| ||||||| Sbjct 211627 TATTTCGATTCATTCTCTT 211645 >seq1318 Length=107216 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||||||| Sbjct 45112 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 45053 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 45052 CCTACTTGGGGAG 45040 >seq260 Length=818471 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | |||||||||| | ||||||||| |||||||| Sbjct 234372 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGACTGTTAACTGACTGGTCGTATGTTCAAAT 234313 Query 141314 CCTACCTGGGGA 141325 ||||| |||||| Sbjct 234312 CCTACTTGGGGA 234301 >seq177 Length=575278 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171941 TCCATATTCCTGCCGTGCCGGTGCCTGTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTAC 172000 ||| || || ||| | || ||| | ||||| |||||||||||| ||| | |||| Sbjct 226741 TCCTTACTCATGCAGAGCTGGTTCTTGTTCTTCTTGTGCTGGTAAAGTTGTTAATGGTGG 226800 Query 172001 GGTAGATCAGTCAGAGCAATCTTTCCTTGATGATGATCAAATGGACGCAGGATTCGTTCT 172060 || ||||| ||| ||||||||||||||||| ||||| || | ||| | ||||| Sbjct 226801 TGTTAATCAGGAAGATGGTTCTTTCCTTGATGATGACCAAATTGAAGAAGGTTGGGTTCT 226860 Query 172061 GACCTGTGTTGCTTATCCTACA 172082 || ||||||||||| |||||| Sbjct 226861 TACTTGTGTTGCTTACCCTACA 226882 >seq485 Length=309328 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 182312 TTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCA 182371 || ||||| ||||||||||| || |||||||| || |||||| | ||||||||| | || Sbjct 82761 TTTGAGACTTTCTACACAAA-AATATTCTCTTAAACGAAGGTATTCGTGCATGGATGGCG 82819 Query 182372 CCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACC 182421 | | ||||| || ||||| ||| || | ||||||||||| || |||| Sbjct 82820 ACTATAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 82869 >seq145 Length=649883 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 7/170 (4%) Strand=Plus/Minus Query 180075 TACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GT 180133 |||||||||||| |||||||||| || ||| |||||||||||||| ||||| ||| || Sbjct 132355 TACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGAT-TGCTGT 132297 Query 180134 AGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 180193 |||||||| |||||||| || | ||| | ||| | ||||||| | ||||| Sbjct 132296 TGCATATTCAGCTCCAGTTACTACTGCA-----GTTTTTCTTAATCTATCCAATTGGTCA 132242 Query 180194 AGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACT 180243 || || | || | ||||| || || || ||| | || ||||||| Sbjct 132241 GGGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACT 132192 >seq3832 Length=2369 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| || ||||||||||||| ||| Sbjct 2243 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCGAAT 2302 Query 141314 CCTACCTGGGGAG 141326 |||| ||||||| Sbjct 2303 CCTATTTGGGGAG 2315 >seq1943 Length=39883 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| || ||||||||||||| ||| Sbjct 35164 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCGAAT 35105 Query 141314 CCTACCTGGGGAG 141326 |||| ||||||| Sbjct 35104 CCTATTTGGGGAG 35092 >seq264 Length=551193 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 180300 GGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACC 180359 || ||||| ||||| |||||||| || || ||| || ||||||||||| |||| || Sbjct 291918 GGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACT 291977 Query 180360 TCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGT 180419 ||| || | | ||||| || |||| ||| || ||| | ||||||| || ||| Sbjct 291978 TCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGT 292037 Query 180420 CAAGAAGAAGAGACCTACAA 180439 ||||| ||||| ||||| || Sbjct 292038 CAAGAGGAAGAAACCTAAAA 292057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610187555976960