Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2319 363 2e-95 seq1296 165 9e-36 seq432 158 1e-33 seq445 120 4e-22 seq145 105 8e-18 seq219 100 3e-16 seq200 100 3e-16 seq318 89.7 6e-13 seq1196 84.2 3e-11 >seq2319 Length=57875 Score = 363 bits (402), Expect = 2e-95 Identities = 431/584 (74%), Gaps = 0/584 (0%) Strand=Plus/Minus Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860 ||||| | ||||| || || ||||| | |||||| |||||||||| || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920 ||||||||||| ||||| ||||| |||||||||||||||||| | || || || || ||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980 ||||| ||||| |||||||| || |||||| ||| ||||| || | ||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040 ||||| || ||||| ||||| | || ||||| | | ||||| ||||| ||||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100 | || || ||| | ||||| | ||||| ||||| |||||||| || || || ||| Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160 || || || ||||| ||||| || | |||||||| || ||| ||||||||||| | Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 170161 AGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 170220 | |||| ||||||||||| | || ||||| ||| || | ||||| ||| | | ||| Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 170221 ATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCT 170280 ||| | || ||||| ||||| || ||||| || || ||||||||||| || |||||| || Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCT 18103 Query 170281 AACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAA 170340 | || | | || |||| |||| || | ||| | || ||| | ||||||||| Sbjct 18102 CAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 18043 Query 170341 GTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 |||||||||||| | || || || || ||||| ||||||||||| Sbjct 18042 GTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGC 17999 >seq1296 Length=110557 Score = 165 bits (182), Expect = 9e-36 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 169854 ATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCA 169913 ||| || ||||||||||| ||||| ||||| |||||||||||||||||| | || || || Sbjct 75581 ATTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCA 75522 Query 169914 AGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGG 169973 || |||||||| ||||| |||||||| || |||||| ||| ||||| || | ||||| Sbjct 75521 GGCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGG 75462 Query 169974 AGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAAC 170033 || || ||||| || ||||| ||||| | || ||||| | | ||||| ||||| Sbjct 75461 CGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAAC 75402 Query 170034 AACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAAC 170087 ||||| | || || ||| | ||||| | ||||| ||||| |||||||| Sbjct 75401 TACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 75348 >seq432 Length=331984 Score = 158 bits (174), Expect = 1e-33 Identities = 360/544 (66%), Gaps = 21/544 (4%) Strand=Plus/Plus Query 170755 TGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTT 170814 |||| || ||||| ||||||||||| || ||| ||||||| ||| | || ||| Sbjct 47500 TGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAATTAGGTGGTC 47559 Query 170815 TATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAAT 170874 | |||| ||||| || | || || | || ||| | |||||||| ||| | | |||| Sbjct 47560 TGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATGTTACGTCAAT 47619 Query 170875 TTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTA 170934 |||| | || || ||| | | ||||| || ||| |||||||||| | | | Sbjct 47620 TTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAATCGCATTCTCCGGTCCAA 47679 Query 170935 TCGCAGTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCG 170994 | || || || | | || || || |||||||| |||||| |||||||||| | Sbjct 47680 TTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTG 47739 Query 170995 CACCATCATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACA 171054 |||| || ||||| ||||| || ||||| | || | || | ||||| || || | Sbjct 47740 CACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATA 47799 Query 171055 ACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTAT 171114 | ||||| || |||||||| |||||||| ||||| || || | || | || ||| Sbjct 47800 ATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCCCTAT 47859 Query 171115 TATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATA 171174 |||| || |||||||| || || || | || || || | ||||| || Sbjct 47860 TATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAG------------ATG 47907 Query 171175 CTGATAATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAA 171234 ||| | |||| ||||||||||| ||| | || || || | ||||||| Sbjct 47908 GGGAT-----GGTGCAAA----TACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAA 47958 Query 171235 CTTACAGTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTA 171294 |||| ||| | || || ||| | || ||||| || || ||||| ||||||| || | Sbjct 47959 CTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCA 48018 Query 171295 ACAA 171298 | || Sbjct 48019 ATAA 48022 >seq445 Length=326537 Score = 120 bits (132), Expect = 4e-22 Identities = 182/257 (71%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 153718 TGATGCAACCTGTAGGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTG 153777 || || ||||| ||||| | ||| |||||||| ||| ||| ||||| || | Sbjct 228582 TGTTGAAACCTCCTGGTGAATTTGGAGCTGATATTGTTGTCGGTTCAGCTCAAAGATTCG 228641 Query 153778 GTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATA 153837 || |||| ||||| ||||| |||||||||||||| ||||| || || || | |||| | Sbjct 228642 GTGTTCCAATGGGTTATGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCACAAGAGTACA 228701 Query 153838 AGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGC 153895 |||| | ||| ||||| ||||| | | || ||| || ||| | ||||| ||| Sbjct 228702 AGAGGATGATGCCTGGAAGAATCATTGGTGTTAGT--GTTGATTCTTCTGGTAAGTCAGC 228759 Query 153896 ATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAA 153955 | || | || | || || || ||||||||||| | || ||||| || ||||| || Sbjct 228760 TTTGAGGATGGCTATGCAAACCAGGGAGCAGCATATTCGTAGGGACAAGGCTACCAGCAA 228819 Query 153956 CATCTGCACAGCTCAGG 153972 ||| ||||| ||||||| Sbjct 228820 CATTTGCACTGCTCAGG 228836 >seq145 Length=649883 Score = 105 bits (116), Expect = 8e-18 Identities = 127/173 (73%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 169729 TACATGGGAAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTT 169788 |||||||| | ||||||||||| | | || || ||||| |||||||| |||| Sbjct 132355 TACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGATTGCTGTT 132296 Query 169789 GCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAG 169848 ||||| || || ||||| || ||||| | | |||||| | || ||| |||||||| Sbjct 132295 GCATATTCAGCTCCAGTTACTACTGCAGT-----TTTTCTTAATCTATCCAATTGGTCAG 132241 Query 169849 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTAT 169901 || || | ||||||||||| || || ||||| |||||||||||||||| Sbjct 132240 GGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACTTTAT 132188 >seq219 Length=535087 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 |||| |||||||||||| | ||||| || |||| | || ||| | | ||| || || Sbjct 252282 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATT 252224 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 | || |||||||| || |||||||| ||||| || || || | || || || | || Sbjct 252223 ATCGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGA 252164 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 ||| | | || || ||||| || || || ||||| || |||| | || ||||| Sbjct 252163 TCTCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATT 252104 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGAT 169662 || | ||||| ||||| || |||||||| ||| | |||||| Sbjct 252103 GGTTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGAT 252062 >seq200 Length=959787 Score = 100 bits (110), Expect = 3e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171366 GTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCA 171425 || ||||| || || ||||| | || || || || || |||||||| || | ||||| Sbjct 265341 GTCGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCG 265282 Query 171426 GAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGA 171485 ||||| || || || |||||||||||||| || ||||| || | || |||||||| | Sbjct 265281 GAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGT 265222 Query 171486 GCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTA 171545 || |||||| | | || || || ||||| ||| | ||||||| || || || || Sbjct 265221 GCGTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTA 265162 Query 171546 CCA 171548 ||| Sbjct 265161 CCA 265159 >seq318 Length=400206 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 170171 TCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAA 170230 ||||| |||| | || ||||| ||| || | ||||| | | | |||||| | || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 170231 TGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAA 170290 |||| ||||| || ||| | || || ||||||||||| || |||||| || | || Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 170291 TCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATG 170350 | | || |||| |||| | | ||| | || ||| | |||||||||||||||||| Sbjct 349213 TAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATA 349272 Query 170351 AAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 || | || | || || || || | ||| ||||| Sbjct 349273 AACGTAACACTCATAATTTTCCTCCAGAGCTAGC 349306 >seq1196 Length=183224 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 171198 ACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAAC 171257 ||||||||||| ||| | || || || | ||||||||||| ||| | || || ||| Sbjct 19739 ACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAAC 19680 Query 171258 AGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTT 171317 | || ||||| || || ||||| ||||||| || || ||| | | ||||| ||| || Sbjct 19679 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTT 19620 Query 171318 ATGTTGTTCGTTCCTGTCATGGGTATGTGGA 171348 ||||| || || | || | |||| | |||| Sbjct 19619 ATGTTATTTGTCCGAGTAACGGGTTTATGGA 19589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579014245852160