Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq2319 398 8e-106 seq432 293 3e-74 seq1296 147 2e-30 seq219 140 4e-28 seq318 114 1e-20 seq1196 109 6e-19 seq2286 100 3e-16 seq5156 98.7 1e-15 seq2312 98.7 1e-15 seq814 98.7 1e-15 seq1868 96.9 4e-15 seq264 95.1 1e-14 seq2162 89.7 6e-13 >seq2319 Length=57875 Score = 398 bits (440), Expect = 8e-106 Identities = 444/593 (75%), Gaps = 0/593 (0%) Strand=Plus/Minus Query 164184 CCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCT 164243 || |||||||| || | ||||| ||| || |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 164244 GACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAG 164303 || | ||||| || || |||||||| || ||||||| ||| | || || || || ||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 164304 CACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCT 164363 || || || || ||||| || || || ||| | || || ||||| ||||| ||||| || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 164364 CTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAA 164423 || |||||||| ||||||||||| |||| |||||| || | | ||||| || ||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 164424 ACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTT 164483 | ||| || ||| | ||||||| || |||||||| |||||||| || || ||||| Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 164484 GCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGT 164543 || ||||| ||||| ||||| || ||||||||||||||||| ||||||||||| ||| Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 164544 TCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGT 164603 || || || |||||||| ||||| |||||||| || || |||||||| ||||| | ||| Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 164604 GTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGT 164663 | || ||||| ||||| | || || || || || ||||| ||| || | ||| | Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCT 18103 Query 164664 CAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAA 164723 || |||||||| | ||||| ||||| || || | ||||| ||| || ||||||||| Sbjct 18102 CAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 18043 Query 164724 GTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 164776 |||||||| || ||||||||||| || |||||||| || || ||||| | ||| Sbjct 18042 GTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 293 bits (324), Expect = 3e-74 Identities = 387/534 (72%), Gaps = 2/534 (0%) Strand=Plus/Plus Query 165410 CATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAA 165469 |||||| | || | || ||||||||||| || || || ||||| | | ||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 165470 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATG 165529 | || || || ||| ||||||| || || ||||| ||||||| |||| ||||| ||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 165530 CTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTT 165588 | ||||| |||||| | || || ||| || | | || || || ||||| || || || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATCGCATT 47668 Query 165589 CTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAG 165648 ||| ||||| || |||||||||||| || || || || || || |||||||| || | Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 165649 TTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACA 165708 |||||| || || || ||| || || ||||| || || | ||| ||||||| | || Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCA 47788 Query 165709 AGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGG 165768 ||| || ||||| ||||| || || || |||||||||||||| ||||| ||| | |||| Sbjct 47789 AGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGG 47848 Query 165769 TGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGG 165828 | || | | | || || ||||| | ||| ||||| ||||| | | | ||||||| Sbjct 47849 CGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGG 47908 Query 165829 TGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAAT 165888 || | ||||||||| ||| || ||| || | || |||| ||||||||| || ||||| Sbjct 47909 GGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAAT 47968 Query 165889 GGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAA 165942 ||| || || ||||| || ||||| || ||||| || |||| ||| ||||| Sbjct 47969 GGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 147 bits (162), Expect = 2e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 164250 ATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAAC 164309 ||||| || || |||||||| || ||||||| ||| | || || || || ||||| || Sbjct 75568 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAAT 75509 Query 164310 ATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTC 164369 || || ||||| || || || ||| | || || ||||| ||||| ||||| || || ||| Sbjct 75508 ATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 75449 Query 164370 AGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAG 164429 ||||| ||||||||||| |||| |||||| || | | ||||| || |||| ||| Sbjct 75448 AGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAA 75389 Query 164430 TCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAAC 164470 || ||| | ||||||| || |||||||| |||||||| Sbjct 75388 TCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 75348 >seq219 Length=535087 Score = 140 bits (154), Expect = 4e-28 Identities = 168/223 (75%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 163825 TTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCAT 163882 |||| ||||| || ||| ||||||||||||| || ||| | ||||| ||||| || || Sbjct 252282 TTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTAT 252225 Query 163883 CGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGG 163942 |||| ||| | ||||| || ||||| || || |||||||||||||| |||||| | || Sbjct 252224 TATCGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGG 252165 Query 163943 TTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAAT 164002 || || | || || ||||| || || || ||||| || |||| | || || || Sbjct 252164 ATCTCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTAT 252105 Query 164003 TGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGAT 164045 |||| | ||||| ||||| || |||||||| |||||| ||||| Sbjct 252104 TGGTTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGAT 252062 >seq318 Length=400206 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 164554 TCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGA 164613 ||||| | ||||| || ||||| || || |||||||| | || | ||| | || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 164614 TGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTG 164673 |||| ||||| | || | || || || ||||| ||| || | ||| ||| ||||||| Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 164674 TGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACG 164733 | | ||||||||||| || | | ||||| ||| || ||||||||||||||||| Sbjct 349213 TAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATA 349272 Query 164734 AGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 164776 | |||||| |||| || || |||| || || ||||| | ||| Sbjct 349273 AACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 >seq1196 Length=183224 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 165835 TGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTAC 165894 ||||||||| ||| || ||| || | || |||| ||||||||| || |||||||| || Sbjct 19746 TGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCAC 19687 Query 165895 TGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCA 165954 || ||||| || ||||| || ||||| || |||| ||| ||||| | ||||| || Sbjct 19686 CGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACA 19627 Query 165955 TTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGA 165992 |||||||||| | ||||| | || | |||| | |||| Sbjct 19626 TTTCTTTATGTTATTTGTCCGAGTAACGGGTTTATGGA 19589 >seq2286 Length=21248 Score = 100 bits (110), Expect = 3e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 165863 ACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTC 165922 || |||| ||||||||| || |||||||| || || ||||| || ||||| || ||||| Sbjct 6813 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 6754 Query 165923 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 165982 || |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | | Sbjct 6753 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACG 6694 Query 165983 GGTCTTTGGA 165992 ||| | |||| Sbjct 6693 GGTTTATGGA 6684 >seq5156 Length=1562 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 165851 GCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGG 165910 || ||| || | || |||| ||||||||| || ||| |||| || || ||||| || ||| Sbjct 933 GCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAGTGGTCACCGCTAACCGCTTATGG 874 Query 165911 TCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTT 165970 || || |||||||| |||| ||| ||||| | ||||| |||||||||||| | ||| Sbjct 873 TCCCAAATCTTCGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 814 Query 165971 GTTCCTGTTATGGGTCTTTGGA 165992 || || | | |||| | |||| Sbjct 813 GTCCCAATAACGGGTTTATGGA 792 >seq2312 Length=20438 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 165851 GCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGG 165910 || ||| || | || |||| ||||||||| || |||||||| || || ||||| || ||| Sbjct 19773 GCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 19714 Query 165911 TCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTT 165970 || || ||||| || |||| ||| ||||| | ||||| |||||||||||| | ||| Sbjct 19713 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 19654 Query 165971 GTTCCTGTTATGGGTCTTTGGA 165992 || || || | ||| | |||| Sbjct 19653 GTCCCAGTAACAGGTTTATGGA 19632 >seq814 Length=198837 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 165851 GCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGG 165910 || ||| || | || ||| ||||||||| || |||||||| || || ||||| || ||| Sbjct 115047 GCTTTTAACCCAACCCAAACGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 115106 Query 165911 TCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTT 165970 || || ||||| || |||| ||| ||||| | ||||| |||||||||||| | ||| Sbjct 115107 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 115166 Query 165971 GTTCCTGTTATGGGTCTTTGGA 165992 || || || | |||| | |||| Sbjct 115167 GTCCCAGTAACGGGTTTATGGA 115188 >seq1868 Length=44937 Score = 96.9 bits (106), Expect = 4e-15 Identities = 99/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 165851 GCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGG 165910 || ||| || | || |||| ||||||||| || |||||||| ||||| ||||| || ||| Sbjct 39527 GCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGG 39586 Query 165911 TCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTT 165970 || || ||||| || |||| ||| ||||| | ||||| |||||||||||| | ||| Sbjct 39587 TCCCAAATCTTGGGG-TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 39645 Query 165971 GTTCCTGT 165978 || || || Sbjct 39646 GTCCCAGT 39653 >seq264 Length=551193 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 164337 GGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACT 164396 || || ||||| ||||| ||||| || || |||||||| ||||||||||| |||| ||| Sbjct 291918 GGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACT 291977 Query 164397 TCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGT 164456 ||| || | | ||||| || |||| ||| || ||| | ||||||| || ||| Sbjct 291978 TCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGT 292037 Query 164457 CAAGAAGAAGAAACATACAA 164476 ||||| |||||||| || || Sbjct 292038 CAAGAGGAAGAAACCTAAAA 292057 >seq2162 Length=26882 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 165851 GCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGG 165910 || ||| || | || |||| ||| ||||| || ||| |||| || || ||||| || ||| Sbjct 20864 GCTTTTAACCCAACCCAAGCGGAGGAAACTTATTCATTGGTCACCGCTAACCGCTTTTGG 20923 Query 165911 TCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTT 165970 || || ||||| || |||| ||| ||||| | ||||| |||||||||||| | ||| Sbjct 20924 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTT 20983 Query 165971 GTTCCTGTTATGGGTCTTTGGA 165992 || || || | ||| | |||| Sbjct 20984 GTCCCAGTAACTGGTTTATGGA 21005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556733886178560