Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq2319 419 3e-112 seq1296 192 7e-44 seq318 105 8e-18 seq264 96.9 4e-15 seq145 91.5 2e-13 >seq2319 Length=57875 Score = 419 bits (464), Expect = 3e-112 Identities = 433/567 (76%), Gaps = 0/567 (0%) Strand=Plus/Minus Query 168907 TGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGG 168966 |||||| ||| | | |||||| |||||||||| || || ||||||||||||||||| Sbjct 18565 TGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGG 18506 Query 168967 AATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCA 169026 ||| ||||| || |||||||| ||| | ||||| || || ||||| || ||||||||||| Sbjct 18505 AATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 18446 Query 169027 TCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCA 169086 ||| || || ||| ||| ||||| ||| | ||||| || || |||||| || ||||| Sbjct 18445 TCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 18386 Query 169087 TGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTA 169146 ||||| | ||||| ||| | | ||||| || ||||| || | |||||| ||| | Sbjct 18385 CGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGA 18326 Query 169147 TGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTT 169206 ||||||| ||||||||||| |||||||||||||||||||| || || ||||| || || Sbjct 18325 AGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTT 18266 Query 169207 CGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 169266 || |||| |||||||| || || |||||||||||||| | | | || |||||||| Sbjct 18265 TGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCT 18206 Query 169267 AGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATT 169326 ||| | | || || ||| || | ||||| ||| | | |||||| |||| ||||| || Sbjct 18205 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGTATCAGTACTATGGCTTT 18146 Query 169327 CAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCC 169386 ||| || || |||||||| ||||||||||| || || ||| | | ||| | ||| Sbjct 18145 CAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTGTAATTAA 18086 Query 169387 TACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAA 169446 || |||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| Sbjct 18085 CACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 18026 Query 169447 CGCTCACAACTTCCCACTAGACTTAGC 169473 |||||| || ||||| |||||| |||| Sbjct 18025 CGCTCATAATTTCCCTCTAGACCTAGC 17999 >seq1296 Length=110557 Score = 192 bits (212), Expect = 7e-44 Identities = 185/238 (78%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 168944 TTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAA 169003 || || |||||||||||||||||||| ||||| || |||||||| ||| | ||||| || Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 169004 GCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGT 169063 || ||||| || |||||||||||||| || || ||| ||| ||||| ||| | ||||| Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 169064 GGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACT 169123 || || |||||| || ||||| ||||| | ||||| ||| | | ||||| || ||| Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACT 75401 Query 169124 ACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATA 169181 || || | |||||| ||| | ||||||| ||||||||||| |||||||||| || Sbjct 75400 ACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTNTA 75343 >seq318 Length=400206 Score = 105 bits (116), Expect = 8e-18 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 169260 TCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAA 169319 ||||| |||| | | || || ||| || | ||||| | | | |||||| |||| Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 169320 TGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGA 169379 |||| ||||| || || ||||||| ||||||||||| || || ||| | | ||| Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 169380 TCATTCCTACATGGGGTGACGTAC--TTAACAGAGCAAACCTTGGTATGGAAGTAATGCA 169437 | ||| || |||| ||| ||| ||||| | || ||||||||||||||||| ||||| Sbjct 349213 TAATTAACACTTGGGCTGA--TACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCA 349270 Query 169438 TGAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473 | | |||||| |||| || || || | ||| |||| Sbjct 349271 TAAACGTAACACTCATAATTTTCCTCCAGAGCTAGC 349306 >seq264 Length=551193 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 169042 AGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAAC 169101 ||| ||||| ||| | ||||| || || |||||| || ||||| ||||| | ||||| Sbjct 291917 AGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAAC 291976 Query 169102 ATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGG 169161 ||| | | ||||| || ||||| || | |||||| ||| | ||||||| ||||| Sbjct 291977 TTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGG 292036 Query 169162 TCAAGAAGAAGAAACCTATAA 169182 |||||| ||||||||||| || Sbjct 292037 TCAAGAGGAAGAAACCTAAAA 292057 >seq145 Length=649883 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/174 (72%), Gaps = 7/174 (4%) Strand=Plus/Minus Query 168818 TACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTT 168877 ||||||||| | |||||||| || | | | |||||| | |||||||| |||| Sbjct 132355 TACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGATTGCTGTT 132296 Query 168878 GCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTG-TATACCCATTTGGTCA 168936 || |||||||| ||||| || | |||||| || ||| | || ||| ||||||| Sbjct 132295 GCATATTCAGCTCCAGTTACTAC------TGCAGTTTTTCTTAATCTATCCAATTGGTCA 132242 Query 168937 GGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCAT 168990 ||| || | |||||||||||||| ||||| ||| | || |||||||| || Sbjct 132241 GGGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACTTTAT 132188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564248109419520