Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq2319 381 7e-101 seq432 316 2e-81 seq1296 156 5e-33 seq1868 102 9e-17 seq264 95.1 1e-14 seq200 89.7 6e-13 seq318 87.8 2e-12 >seq2319 Length=57875 Score = 381 bits (422), Expect = 7e-101 Identities = 439/589 (75%), Gaps = 4/589 (1%) Strand=Plus/Minus Query 162784 CCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 162843 || |||||||| || | ||||| ||| || |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 162844 GACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAG 162903 || | ||||| | || ||| |||||| ||||||| ||| |||| || || || ||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 162904 CACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCA 162963 || || ||||| |||||||| || |||||||| ||||| || ||||| ||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 162964 CTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAA 163023 || |||||||| ||||||||||| ||||| || ||| | || | || || || ||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 163024 ACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTC 163083 | ||| || ||| | ||||||| ||||||||||| ||||| || || || || || Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 163084 GCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGT 163143 || || |||||||| || || || |||||||||||||| || ||||||||||| ||| Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 163144 TCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGC 163203 || || || |||||||| ||||| |||||||| || || |||||||| ||||| | || Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGG- 18164 Query 163204 GTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATG 163261 | ||| || ||||| ||||| | || || || || || ||||| ||| || ||||| Sbjct 18163 -TATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATT 18105 Query 163262 GTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGG 163321 ||| |||||||| | ||||||||||| || || | |||||||| | ||||||| Sbjct 18104 CTCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGG 18045 Query 163322 AAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGC 163370 |||||||||| || || || ||||| || ||||| || ||||| || || Sbjct 18044 AAGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGC 17996 >seq432 Length=331984 Score = 316 bits (350), Expect = 2e-81 Identities = 397/538 (74%), Gaps = 10/538 (2%) Strand=Plus/Plus Query 163837 CATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCA 163895 |||||| || || || || ||||||||||| || ||||| ||||| ||| ||| || Sbjct 47490 CATTCT-TTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCA 47548 Query 163896 ACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCAT 163955 | | || || || |||| |||||| || || ||||| || || | | || ||||| || Sbjct 47549 ATTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTAT 47608 Query 163956 GCTTCGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAGACCCTACAATGCGATTGCTT 164014 | | || ||||||||||||||||| ||| || | | | || || ||||| || || | Sbjct 47609 GTTACGTCAATTTGAACTTGCTCGATCTG-TTCAATTGCGGCCTTATAATGCAATCGCAT 47667 Query 164015 TCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAA 164074 |||| ||||| |||||||| || ||| ||| || || || || || |||||||| || Sbjct 47668 TCTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTG 47727 Query 164075 GTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTC---CTCTTATTCC 164131 |||||||||| || || |||||| || ||||| || || ||||| ||||| |||| Sbjct 47728 GTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCC 47787 Query 164132 TTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATAC 164191 |||| |||||||| ||||| || ||||| || ||||||||||||||||||||| || Sbjct 47788 ---AAGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTAT 47844 Query 164192 TAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAG 164251 | |||| || | ||| |||||||| || | || || |||||||| || | ||||| Sbjct 47845 TGGGCGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAG 47904 Query 164252 ATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATT 164311 |||| || ||||| || || || ||| | | || || | ||||| ||||||| Sbjct 47905 ATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATT 47964 Query 164312 CTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAA 164369 | |||||||| || |||||||| ||||| || ||||| || ||||| ||||| || || Sbjct 47965 CAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 156 bits (172), Expect = 5e-33 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 162850 ATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 162909 ||||| | || ||| |||||| ||||||| ||| |||| || || || ||||| || Sbjct 75568 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAAT 75509 Query 162910 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTC 162969 ||||| |||||||| || |||||||| ||||| || ||||| ||||| || || || ||| Sbjct 75508 ATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 75449 Query 162970 AGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAG 163029 ||||| ||||||||||| ||||| || ||| | || | || || || |||| ||| Sbjct 75448 AGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAA 75389 Query 163030 TCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 163070 || ||| | ||||||| ||||||||||| ||||| || Sbjct 75388 TCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 75348 >seq1868 Length=44937 Score = 102 bits (112), Expect = 9e-17 Identities = 96/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 164299 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCG 164358 ||||| |||||||| ||||||||||| |||||||| ||||| || ||||| || ||||| Sbjct 39548 GAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTT-GGGGTTGCT 39606 Query 164359 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGG 164418 ||||| || || || ||| | ||||| || ||||| ||||| || || | ||| ||| | Sbjct 39607 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACTGGTTTATTG 39666 Query 164419 A 164419 | Sbjct 39667 A 39667 >seq264 Length=551193 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 162930 CATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTT 162989 || ||| ||||| || ||||| ||||| || || || |||||||| ||||||||||| || Sbjct 291911 CACGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTT 291970 Query 162990 GGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAA 163049 ||| || ||| | || | || || || |||| ||| || ||| | ||||||| Sbjct 291971 GGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACAG 292030 Query 163050 GTTCGGTCAAGAAGAAGAGACATACAA 163076 ||||||||||| ||||| || || || Sbjct 292031 ATTCGGTCAAGAGGAAGAAACCTAAAA 292057 >seq200 Length=959787 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 164389 ATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCT 164448 ||||| ||||| || || | ||| |||||| || |||| | | || || || Sbjct 265389 ATGTTATTTGTCCCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCC 265330 Query 164449 CTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAG 164508 || || || ||||| || || || || |||||| || | ||||| ||||||||||| Sbjct 265329 CTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 265270 Query 164509 TTCGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGG 164562 || ||||||||||| ||||| || || | || |||||||| | ||||| ||| Sbjct 265269 TTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGG 265216 >seq318 Length=400206 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 163154 TCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA--AC 163211 ||||| | ||||| || ||||| || || |||||||| | || | || | ||| || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGG--TATCAGTAC 349150 Query 163212 CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCG 163271 |||| ||||| | || | || || || ||||| ||| || ||||| ||| ||||| Sbjct 349151 TGTGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCG 349210 Query 163272 TGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCA 163331 ||| | ||||| ||||| || | | |||||||| | ||||||||||||||||| Sbjct 349211 TGTAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCA 349270 Query 163332 CGAGCGCAATGCTCACAACTTCCC 163355 | || || |||| || || || Sbjct 349271 TAAACGTAACACTCATAATTTTCC 349294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557392860204800