Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq432 309 3e-79 seq2319 293 3e-74 seq200 168 7e-37 seq1296 156 5e-33 seq219 136 4e-27 seq485 107 2e-18 seq26 100 3e-16 seq264 91.5 2e-13 seq1196 89.7 6e-13 seq2286 87.8 2e-12 seq814 87.8 2e-12 seq2280 86.0 7e-12 seq2312 84.2 2e-11 seq2162 84.2 2e-11 >seq432 Length=331984 Score = 309 bits (342), Expect = 3e-79 Identities = 385/525 (73%), Gaps = 2/525 (0%) Strand=Plus/Plus Query 168699 CATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAA 168758 |||||| | || | || ||||||||||| ||||| || ||||| | | ||||||||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 168759 CTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATG 168818 | || || || ||| ||||||| || || ||||| ||||||| |||| ||||| ||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 168819 CTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTT 168877 | ||||| |||||||| || || ||| || | | || || || ||||| || || || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATCGCATT 47668 Query 168878 CTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAG 168937 ||| ||||| || |||||||||||| || || || || || || |||||||| || | Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 168938 TTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACA 168997 |||||| || || || ||| || || |||| || || |||||| ||||||| | || Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCA 47788 Query 168998 AGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGG 169057 ||| || ||||| |||||| | || ||||||||||||||||| || || ||| | ||||| Sbjct 47789 AGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGG 47848 Query 169058 AGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGG 169117 | ||| | | | || |||||||| | ||| ||||| ||||| | | | ||||||| Sbjct 47849 CGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGG 47908 Query 169118 TGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAAT 169177 || |||||||| ||| || ||| || || || | || || || |||||||| Sbjct 47909 GGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAAT 47968 Query 169178 GGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTT 169222 ||| || || ||||| || ||||| || |||||||| |||| || Sbjct 47969 GGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTT 48013 >seq2319 Length=57875 Score = 293 bits (324), Expect = 3e-74 Identities = 415/593 (70%), Gaps = 0/593 (0%) Strand=Plus/Minus Query 167487 CCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 167546 ||||| || || || |||| || ||| | |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 167547 GACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAG 167606 || | |||||||| || ||||||||||| ||||||| ||| |||| || || || ||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 167607 CACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCT 167666 || || || || ||||| || || || ||| | || || ||||| ||||||||||| || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 167667 CTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAA 167726 || |||||||| ||||||||||| |||| || ||| || | | ||||| || ||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 167727 ACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTC 167786 | ||| || ||| | ||||||| |||||||| || ||||| || ||||| || || Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 167787 GCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGC 167846 |||||||||||||| || || || |||||||||||||||| ||||||||||| || Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 167847 TCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNN 167906 || | || |||||| | || || |||||||| || |||||||||| Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 167907 NNNNNNNNNNNNNNATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGT 167966 ||||| | || || || || || ||||| || || ||||| | Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCT 18103 Query 167967 TCTGGTAAGGTTCTGCCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAA 168026 ||| || | || ||||| || | | ||||||||| || ||||||||| Sbjct 18102 CAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 18043 Query 168027 GTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 168079 |||||||| || ||||| ||||| || |||||||| ||||| ||||| | ||| Sbjct 18042 GTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq200 Length=959787 Score = 168 bits (186), Expect = 7e-37 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 169251 ATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCT 169310 ||| | ||||| || || | ||| | |||| ||| | | || | | ||||| || Sbjct 265389 ATGTTATTTGTCCCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCC 265330 Query 169311 CTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAG 169370 || ||||| ||||| |||||||| ||||| ||||| ||| | ||||| |||||||| || Sbjct 265329 CTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 265270 Query 169371 TTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCA 169430 |||||||| ||||||||||| || || ||||| ||||||||| ||||||| ||| | || Sbjct 265269 TTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCG 265210 Query 169431 CCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGG 169486 || ||||| |||||||| ||| || | ||||||||||| || || || || || Sbjct 265209 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGG 265154 >seq1296 Length=110557 Score = 156 bits (172), Expect = 5e-33 Identities = 170/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 167553 ATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 167612 |||||||| || ||||||||||| ||||||| ||| |||| || || || ||||| || Sbjct 75568 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAAT 75509 Query 167613 ATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTC 167672 || || ||||| || || || ||| | || || ||||| ||||||||||| || || ||| Sbjct 75508 ATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 75449 Query 167673 AGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAG 167732 ||||| ||||||||||| |||| || ||| || | | ||||| || |||| ||| Sbjct 75448 AGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAA 75389 Query 167733 TCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATA 167778 || ||| | ||||||| |||||||| || ||||| || | || Sbjct 75388 TCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTNTA 75343 >seq219 Length=535087 Score = 136 bits (150), Expect = 4e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 167130 GGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCAT 167188 || ||||| || ||| ||||||||||||| || | | |||| | ||||| || || || Sbjct 252280 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAA-CTTCTGTATTTATTAT 252222 Query 167189 CGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTC 167248 ||| ||| | | ||| |||||||| || || |||||||| || || || ||| |||| || Sbjct 252221 CGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATC 252162 Query 167249 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGG 167308 || | || || ||||| || || || ||||| || ||||| ||||| |||||||| Sbjct 252161 TCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATTGG 252102 Query 167309 TCTTCACTTCTATCCCATCTGGGAAGCAGCAACC 167342 | | ||||| || || || |||||||| ||| || Sbjct 252101 TTTGCACTTTTACCCGATATGGGAAGCTGCATCC 252068 >seq485 Length=309328 Score = 107 bits (118), Expect = 2e-18 Identities = 96/119 (81%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 169371 TTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCA 169430 |||||||| |||||||| || || || ||||| ||||||||| ||||||||||| | || Sbjct 82761 TTTGAGACTTTCTACACAAA-AATATTCTCTTAAACGAAGGTATTCGTGCATGGATGGCG 82819 Query 169431 CCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAA 169489 |||| ||||| |||||||| ||| || | ||||||||||| || || || || || || Sbjct 82820 ACTATAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAA 82878 >seq26 Length=132285 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 169355 AGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCT 169414 ||| |||||||| | |||||||| ||||||||||| || || ||||| || |||||| | Sbjct 33083 AGCGGAAGATCCTGGATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTAT 33024 Query 169415 TCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGT 169474 |||||| ||| || || |||| |||||||| ||| || ||||||||||||| || Sbjct 33023 TCGTGCGTGGACGGCGGCTCAAGATCTGCCTCATGAAAACCTTATGTTCCCTGAGGAGGT 32964 >seq264 Length=551193 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 167640 GGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACC 167699 || || ||||| ||||||||||| || || |||||||| ||||||||||| |||| || Sbjct 291918 GGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACT 291977 Query 167700 TCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGT 167759 ||| || | | ||||| || |||| ||| || ||| | ||||||| |||||| Sbjct 291978 TCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGT 292037 Query 167760 CAGGAAGAAGAGACGTATAA 167779 || || ||||| || || || Sbjct 292038 CAAGAGGAAGAAACCTAAAA 292057 >seq1196 Length=183224 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 169125 GCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACT 169184 |||||||| ||| || ||| || || || | || || || ||||||||||| || Sbjct 19745 GCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACC 19686 Query 169185 GCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCAT 169244 || ||||| || ||||| || |||||||| |||| || ||||| | ||||| ||| Sbjct 19685 GCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACAT 19626 Query 169245 TTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGA 169281 ||||||||| | ||||| | || | |||| | |||| Sbjct 19625 TTCTTTATGTTATTTGTCCGAGTAACGGGTTTATGGA 19589 >seq2286 Length=21248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 169161 GAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCG 169220 || || || ||||||||||| || || ||||| || ||||| || |||||||| |||| Sbjct 6804 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 6745 Query 169221 TTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGG 169280 || ||||| | ||||| |||||||||||| | ||||| || || | |||| | ||| Sbjct 6744 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACGGGTTTATGG 6685 Query 169281 A 169281 | Sbjct 6684 A 6684 >seq814 Length=198837 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 169161 GAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCG 169220 || || || ||||||||||| || || ||||| || ||||| || |||||||| |||| Sbjct 115068 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 115127 Query 169221 TTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGG 169280 || ||||| | ||||| |||||||||||| | ||||| || || | |||| | ||| Sbjct 115128 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACGGGTTTATGG 115187 Query 169281 A 169281 | Sbjct 115188 A 115188 >seq2280 Length=21636 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 169384 ACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAAC 169443 ||||||| || || ||||| ||||||||| ||||||| ||| | || || ||||| | Sbjct 263 ACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCGGCTCAAGATCAGC 204 Query 169444 CTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 ||||||| ||| || | ||||||||||| || || || || || || || || Sbjct 203 CTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 152 >seq2312 Length=20438 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 169161 GAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCG 169220 || || || ||||||||||| || || ||||| || ||||| || |||||||| |||| Sbjct 19752 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 19693 Query 169221 TTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGG 169280 || ||||| | ||||| |||||||||||| | ||||| || || | ||| | ||| Sbjct 19692 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACAGGTTTATGG 19633 Query 169281 A 169281 | Sbjct 19632 A 19632 >seq2162 Length=26882 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 169161 GAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCG 169220 ||||| || |||||| |||| || || ||||| || ||||| || |||||||| |||| Sbjct 20885 GAGGAAACTTATTCATTGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 20944 Query 169221 TTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGG 169280 || ||||| | ||||| |||||||||||| | ||||| || || | ||| | ||| Sbjct 20945 TTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACTGGTTTATGG 21004 Query 169281 A 169281 | Sbjct 21005 A 21005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560415823577600