Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq2319 347 2e-90 seq1296 181 2e-40 seq219 109 8e-19 seq264 95.1 2e-14 >seq2319 Length=57875 Score = 347 bits (384), Expect = 2e-90 Identities = 428/585 (73%), Gaps = 0/585 (0%) Strand=Plus/Minus Query 215702 GCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATG 215761 ||||| |||||| ||| | | || ||| | |||||||| || || |||| |||| Sbjct 18573 GCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCAGATGGTATG 18514 Query 215762 CCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATT 215821 || || ||||||||||| || ||||||| ||| |||| || ||||||||||| || ||| Sbjct 18513 CCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAATATT 18454 Query 215822 CTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCT 215881 || ||||| || || |||||||||||||| |||||||| ||||| || || | ||| | Sbjct 18453 CTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGT 18394 Query 215882 GCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCT 215941 || ||||||||||| | || || ||| | | ||||| || || || || | |||||| Sbjct 18393 GCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCT 18334 Query 215942 CAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACAC 216001 ||| | ||||||| ||||| |||||||| ||||| || || || |||||||| || Sbjct 18333 GCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCAT 18274 Query 216002 GGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCAC 216061 ||||| ||||| || | |||||||||||||| |||||||||||| | | | || Sbjct 18273 GGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGTTCTTTACAT 18214 Query 216062 TTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACT 216121 |||||||| || || | ||||| | |||||||| || || | ||| || ||| Sbjct 18213 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGTATCAGTACT 18154 Query 216122 ATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAA 216181 ||||| ||||| | || || || || || ||||| || ||||| || | ||| Sbjct 18153 ATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGT 18094 Query 216182 GTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCAC 216241 || ||| || ||||| || || ||||| | || |||||||||||||| ||||| Sbjct 18093 GTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 18034 Query 216242 GAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 || ||||||||||| || ||||| ||||| | ||||| | |||| Sbjct 18033 GAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGAA 17989 >seq1296 Length=110557 Score = 181 bits (200), Expect = 2e-40 Identities = 180/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 215747 TTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAG 215806 || || |||| |||||| || ||||||||||| || ||||||| ||| |||| || ||| Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 215807 GCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGT 215866 |||||||| || ||||| ||||| || || |||||||||||||| |||||||| ||||| Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 215867 GGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACA 215926 || || | ||| ||| ||||||||||| | || || ||| | | ||||| || || Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACT 75401 Query 215927 ACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAAC 215979 || || | |||||| ||| | ||||||| ||||| |||||||| ||||| Sbjct 75400 ACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 75348 >seq219 Length=535087 Score = 109 bits (120), Expect = 8e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 215334 TTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCG 215393 |||| ||||||||||| | ||||| ||| | | | | || || || || || Sbjct 252282 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 252223 Query 215394 TAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTT 215453 | || ||||| ||||| |||||||| ||||| || || || | ||||| ||| |||| | Sbjct 252222 TCGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGAT 252163 Query 215454 CTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCG 215513 || || | || || ||||| || || || ||||| || | |||| ||| || || | Sbjct 252162 CTCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATTG 252103 Query 215514 GATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGA 215553 | || ||||| ||||| || |||||||| ||| | ||||| Sbjct 252102 GTTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGA 252063 >seq264 Length=551193 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 215839 CATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACT 215898 || ||||||||| |||||||| ||||| || || | ||| ||| ||||||||||| | Sbjct 291911 CACGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTT 291970 Query 215899 TGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAA 215958 || || ||| | | ||||| || || || || | |||||| ||| | ||||||| Sbjct 291971 GGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACAG 292030 Query 215959 GTTCGGACAAGAGGAGGAAACATACAA 215985 ||||| |||||||| ||||| || || Sbjct 292031 ATTCGGTCAAGAGGAAGAAACCTAAAA 292057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744826186027520