Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq2319 358 8e-94 seq432 284 1e-71 seq1296 141 1e-28 seq219 129 7e-25 seq145 122 1e-22 seq1196 113 5e-20 seq2286 109 6e-19 seq2312 104 3e-17 seq814 104 3e-17 seq5156 100 3e-16 seq686 100 3e-16 seq1868 98.7 1e-15 seq2162 95.1 1e-14 seq318 91.5 2e-13 seq6003 86.0 7e-12 >seq2319 Length=57875 Score = 358 bits (396), Expect = 8e-94 Identities = 435/590 (74%), Gaps = 6/590 (1%) Strand=Plus/Minus Query 165163 CCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCT 165222 || || || |||||| | ||||||||| || |||| || | ||||| || || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 165223 GATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAA 165282 |||||||||||||| || |||||||||||||| |||| |||| | || || || || || Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 165283 CATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCT 165342 ||||| ||||||||||||||||| |||||| | || || ||||| |||||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 165343 CTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAA 165402 || ||| ||||||||| || | || ||||| | || | || || || ||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 165403 ACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTC 165462 | || | ||| | ||||| | || || ||||| ||||| |||||||| || || Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 165463 GCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGT 165522 ||||| || || || || || || | || ||||||||||| |||||||| || ||| Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 165523 TCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGT 165582 || | || |||||||| || || ||||||||||| ||||||||||| || || | ||| Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 165583 GTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGT 165642 | || || ||||| ||||| | || || || || || ||||| || | |||||| | Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCT 18103 Query 165643 C-AGAAC--AAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATG 165699 | || | ||| | | || |||||||| || | ||||||||| || |||||| Sbjct 18102 CAAGGTCGTGTAATTAAC---ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATG 18046 Query 165700 GAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGC 165749 |||||||||||||| ||||||||||| || ||||| || ||||| ||||| Sbjct 18045 GAAGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGC 17996 >seq432 Length=331984 Score = 284 bits (314), Expect = 1e-71 Identities = 376/519 (72%), Gaps = 2/519 (0%) Strand=Plus/Plus Query 166392 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGG 166451 || ||||||||||| || || || ||||| | | ||||| ||| | || || || ||| Sbjct 47505 CTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAATTAGGTGGTCTGTGG 47564 Query 166452 GCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAA 166511 | ||||||||||| ||||||||||| | |||| ||||| ||| | || || |||||| Sbjct 47565 ACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATGTTACGTCAATTTGAA 47624 Query 166512 ATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGC 166570 | ||||| ||| | | | || || || ||||||||||| || || ||||| ||||| Sbjct 47625 CTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATCGCATTCTCCGGTCCAATTGC 47683 Query 166571 TGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 166630 ||| || ||| ||| || || || || || |||||||| || ||||||| || || || Sbjct 47684 TGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCACC 47743 Query 166631 ATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTG 166690 ||| || || |||| || || |||||| | || || | ||||| || || || || Sbjct 47744 TAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTG 47803 Query 166691 GACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTC 166750 |||| | |||||||||||||||||||| || || ||| | | || | || | | | Sbjct 47804 GACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCCCTATTATG 47863 Query 166751 TGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATAC 166810 || || ||||| | ||| ||||| || || | | | ||||||| || |||||||| Sbjct 47864 CGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGGGGATGGTGCAAATAC 47923 Query 166811 TTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCG 166870 ||| || || || | || |||| ||||||||| ||||||||||| || || ||||| Sbjct 47924 ATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCG 47983 Query 166871 CTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAA 166909 || |||||| || ||||| || |||| ||| ||||| Sbjct 47984 CTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 141 bits (156), Expect = 1e-28 Identities = 119/146 (82%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 165217 TTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAA 165276 || || |||||||||||||| || |||||||||||||| |||| |||| | || || || Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 165277 GCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 165336 || || ||||| ||||||||||||||||| |||||| | || || ||||| |||||||| Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 165337 GGATCTCTTTTCTCTGCTATGCATGG 165362 || || || ||| ||||||||| || Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGG 75435 >seq219 Length=535087 Score = 129 bits (142), Expect = 7e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 164806 GGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTAC 164864 || ||||| |||||| | |||||||| || | |||| || | ||| ||||||| Sbjct 252280 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTAT 252222 Query 164865 TGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTC 164924 || ||||| ||||| || ||||| || ||||||||||||||||| ||||| | || || Sbjct 252221 CGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATC 252162 Query 164925 TCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGG 164984 |||| | ||||| ||||| || || || ||||| | |||| ||||| || || || Sbjct 252161 TCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATTGG 252102 Query 164985 ACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGAT 165024 | ||||| || || || |||||||||||| || | ||| Sbjct 252101 TTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGAT 252062 >seq145 Length=649883 Score = 122 bits (134), Expect = 1e-22 Identities = 138/185 (75%), Gaps = 5/185 (3%) Strand=Plus/Minus Query 165079 GGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCT 165138 ||||||||||| |||||||||||| |||||||||| || || | |||||||| ||| Sbjct 132367 GGTGTAGCTTGTTACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCT 132308 Query 165139 TGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTAT 165198 |||||| || |||||| || || || || |||| | ||||| | ||||| Sbjct 132307 TGGATTGCTGTTGCATATTCAGCTCCAGTTACTACTGCAG-----TTTTTCTTAATCTAT 132253 Query 165199 CCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAAC 165258 || | ||||| || || || | |||||||||||||| || |||||| ||||||| ||| Sbjct 132252 CCAATTGGTCAGGGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAAC 132193 Query 165259 TATAT 165263 | ||| Sbjct 132192 TTTAT 132188 >seq1196 Length=183224 Score = 113 bits (124), Expect = 5e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 166803 GCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACA 166862 |||||||| ||| || || || | || |||| ||||||||| ||||||||||| || Sbjct 19745 GCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACC 19686 Query 166863 GCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCAT 166922 || ||||||| |||||| || ||||| || |||| ||| ||||| | ||||| ||| Sbjct 19685 GCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACAT 19626 Query 166923 TTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGA 166959 ||||||||| | ||||| | || | |||| | |||| Sbjct 19625 TTCTTTATGTTATTTGTCCGAGTAACGGGTTTATGGA 19589 >seq2286 Length=21248 Score = 109 bits (120), Expect = 6e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 || |||| ||||||||| ||||||||||| || || ||||||| |||||| || ||||| Sbjct 6813 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 6754 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 166949 || |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | | Sbjct 6753 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACG 6694 Query 166950 GGTCTGTGGA 166959 ||| | |||| Sbjct 6693 GGTTTATGGA 6684 >seq2312 Length=20438 Score = 104 bits (114), Expect = 3e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 || |||| ||||||||| ||||||||||| || || ||||||| |||||| || ||||| Sbjct 19761 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 19702 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 166949 || |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 19701 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACA 19642 Query 166950 GGTCTGTGGA 166959 ||| | |||| Sbjct 19641 GGTTTATGGA 19632 >seq814 Length=198837 Score = 104 bits (114), Expect = 3e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 || ||| ||||||||| ||||||||||| || || ||||||| |||||| || ||||| Sbjct 115059 ACCCAAACGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 115118 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 166949 || |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | | Sbjct 115119 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACG 115178 Query 166950 GGTCTGTGGA 166959 ||| | |||| Sbjct 115179 GGTTTATGGA 115188 >seq5156 Length=1562 Score = 100 bits (110), Expect = 3e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 || |||| ||||||||| |||||| |||| || || ||||||| ||||| || |||||| Sbjct 921 ACCCAAGCGGAAGAAACTTATTCAGTGGTCACCGCTAACCGCTTATGGTCCCAAATCTTC 862 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 166949 || |||| ||| ||||| | ||||| |||||||||||| | ||||| || | | | Sbjct 861 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAATAACG 802 Query 166950 GGTCTGTGGA 166959 ||| | |||| Sbjct 801 GGTTTATGGA 792 >seq686 Length=409839 Score = 100 bits (110), Expect = 3e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 || |||| ||||||||| ||||||||||| || || ||||||| |||||| || ||||| Sbjct 52872 ACCCAAGTGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 52931 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 166949 || |||| ||| ||||| | ||||| ||||| |||||| | ||||| || || | | Sbjct 52932 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTGTTTATGTTATTTGTCCCAGTAACG 52991 Query 166950 GGTCTGTGGA 166959 || | |||| Sbjct 52992 AGTTTATGGA 53001 >seq1868 Length=44937 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/116 (79%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 || |||| ||||||||| ||||||||||| || || ||||||| |||||| || ||||| Sbjct 39539 ACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTT- 39597 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGT 166945 || |||| ||| ||||| | ||||| |||||||||||| | ||||| || || Sbjct 39598 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 39653 >seq2162 Length=26882 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 || |||| ||| ||||| |||||| |||| || || ||||||| |||||| || ||||| Sbjct 20876 ACCCAAGCGGAGGAAACTTATTCATTGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 20935 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 166949 || |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 20936 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACT 20995 Query 166950 GGTCTGTGGA 166959 ||| | |||| Sbjct 20996 GGTTTATGGA 21005 >seq318 Length=400206 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 165533 TCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCA 165592 ||||| | || || || |||||||| ||||||||||| | | | ||| | || || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 165593 TGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCA-GAACAA- 165650 |||| ||||| | || | || || || ||||| || | |||||| ||| | | Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 165651 -AATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGC 165709 ||| | | ||||||||||| | | ||||||||| || |||||||||||||||| Sbjct 349213 TAATTAAC---ACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGC 349269 Query 165710 ATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGC 165749 || | |||||| |||| || || || | || || ||||| Sbjct 349270 ATAAACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGC 349309 >seq6003 Length=1297 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 165067 CACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTC 165126 |||||| | | ||||||||||| ||||||||||||||||||||||| || || || Sbjct 117 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTAAGTTTTCGTCTG 176 Query 165127 GGTATGCGTCCTTGGATTTGCGTAGCATAT 165156 |||||||| ||||||||| || |||||| Sbjct 177 GGTATGCGCCCTTGGATTGCTGTTGCATAT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563467577077760