Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq2319 334 9e-87 seq1296 159 4e-34 seq145 105 8e-18 seq219 86.0 7e-12 >seq2319 Length=57875 Score = 334 bits (370), Expect = 9e-87 Identities = 424/582 (73%), Gaps = 6/582 (1%) Strand=Plus/Minus Query 170089 CCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCA 170148 ||||| |||| || || || ||||| | || || | ||||||||| || ||| Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 170149 GACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAG 170208 || || ||||||||||| ||||| ||||| || ||||| ||| | ||||| || || ||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 170209 CACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCA 170268 || || ||||||||||| || || || ||| ||| || |||||| | ||||| || | Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 170269 CTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGAT 170328 || ||| || ||||||||||| | ||||| ||| | | ||||| || || ||||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 170329 AACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTT 170388 || || || ||| | || |||| |||||| ||||| |||||||| || || ||||| Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 170389 GCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGT 170448 || || ||||| || ||||| || | ||||||||||| ||||| || ||||| |||| Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 170449 AGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGT 170508 | | || |||||||| ||| | | ||||||||| | |||||||| || | | ||| Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 170509 ATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGA 170568 || | || ||||| || || | ||||||||||| || ||||| || |||| ||| Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGAT--- 18106 Query 170569 TCT---GGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATG 170625 ||| ||| ||| || || ||||| || || ||||| | || ||||| |||||| Sbjct 18105 TCTCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATG 18046 Query 170626 GAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGAC 170667 ||||| |||||||| ||||| || || || ||||| || ||| Sbjct 18045 GAAGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGAC 18004 >seq1296 Length=110557 Score = 159 bits (176), Expect = 4e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202 || ||||| || ||||||||||| ||||| ||||| || ||||| ||| | ||||| || Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGA 170262 || ||||| || ||||||||||| || || || ||| ||| || |||||| | ||||| Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 170263 GGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACA 170322 || | || ||| || ||||||||||| | ||||| ||| | | ||||| || || Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACT 75401 Query 170323 ACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAAC 170375 ||||| || || || ||| | || |||| |||||| ||||| |||||||| Sbjct 75400 ACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 75348 >seq145 Length=649883 Score = 105 bits (116), Expect = 8e-18 Identities = 127/173 (73%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 170017 TACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTA 170076 ||||||||| | ||||||||||| | ||||| |||||||| |||||||| ||| Sbjct 132355 TACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGATTGCTGTT 132296 Query 170077 GCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAG 170136 |||||||| |||||||| | | ||| | | |||||| | ||||| | |||||| Sbjct 132295 GCATATTCAGCTCCAGTTACTACTGCAGT-----TTTTCTTAATCTATCCAATTGGTCAG 132241 Query 170137 GGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCAT 170189 ||| || | ||| || |||||||| || ||||| |||| || ||||| || Sbjct 132240 GGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACTTTAT 132188 >seq219 Length=535087 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 169730 TTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCG 169789 |||| ||||| ||||| ||||||||||| |||| | ||| | | ||||| Sbjct 252282 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 252223 Query 169790 TTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTT 169849 | |||||||| || || || ||||| || || ||||| || | || ||||| | || | Sbjct 252222 TCGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGAT 252163 Query 169850 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 169909 | | | || || ||||| || || || ||||| || |||| |||| || || | Sbjct 252162 CTCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATTG 252103 Query 169910 GTCTCCACTTCTATCCTATTTGGGAAGCAGCA 169941 || | ||||| || || || |||||||| ||| Sbjct 252102 GTTTGCACTTTTACCCGATATGGGAAGCTGCA 252071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582648199705600