Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq2319 369 4e-97 seq1296 183 3e-41 seq219 125 8e-24 seq264 98.7 1e-15 seq318 82.4 9e-11 >seq2319 Length=57875 Score = 369 bits (408), Expect = 4e-97 Identities = 425/572 (74%), Gaps = 0/572 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||| ||||| ||||||||||| ||||| |||||||||||||| ||||| |||| Sbjct 18011 GGGAAATTATGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 18070 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| |||||||| || | ||||| ||| ||| || | || || || ||| Sbjct 18071 ATATCAGCCCAGGTGTTAATTACACGACCTTGAGAATCAACGACGGATTGGTTAAAATTA 18130 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 |||||||| | ||| || ||||| || || | ||| | || | |||||| || || || Sbjct 18131 AATCCATTTAAATTGAAAGCCATAGTACTGATACCTAACGCGGTAAACCAGATACCTACT 18190 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| | ||| || || | ||||||| |||||||| ||| || ||| Sbjct 18191 ACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCGTATTGG 18250 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| ||||||||||| ||||| || |||||| Sbjct 18251 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGA 18310 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||||||||| | ||| | | |||| Sbjct 18311 CCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAGTTTCCCTGATCAAACTAGAA 18370 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||| ||||| ||| |||||| | || |||||||||||||| || || Sbjct 18371 GTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCT 18430 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| ||||||||||| || ||||| || ||||| || |||| ||| ||||| Sbjct 18431 AACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAGTTG 18490 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| ||||| || || || || || | || || Sbjct 18491 AAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATTGGGTAG 18550 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGG 84556 | | ||| || |||| || ||||||||||| Sbjct 18551 ATCAAGAAAACTGCAGTAGCAGCTGCAACTGG 18582 >seq1296 Length=110557 Score = 183 bits (202), Expect = 3e-41 Identities = 183/238 (77%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 84265 TATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAG 84324 || | ||||| || ||||||||||| ||||||| | || || |||||||||||| Sbjct 75343 TANAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAG 75402 Query 84325 TTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCAC 84384 |||| | ||| | | |||||| || | ||||| ||||| ||| |||||| | || | Sbjct 75403 TTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGC 75462 Query 84385 CGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCT 84444 ||||||||||||| || || ||||||||||| ||||||||||| || ||||| || |||| Sbjct 75463 CGAATACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCT 75522 Query 84445 GGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAA 84502 | || |||| ||| ||||||| || || ||||| || || ||||| ||||| || || Sbjct 75523 GAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAA 75580 >seq219 Length=535087 Score = 125 bits (138), Expect = 8e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 84704 TGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGC 84763 ||| |||||||| || || || || || | ||||||||| ||| | |||| | ||| Sbjct 252071 TGCAGCTTCCCATATCGGGTAAAAGTGCAAACCAATAGCCGCAGAAGTAGGAATAATGGC 252130 Query 84764 ACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTC 84823 ||| ||||| || ||||||||||| | ||||| |||| || |||||||| ||||| || Sbjct 252131 ACCCGAAATTATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATC 252190 Query 84824 AATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTA 84882 |||||| || || || ||| ||| ||| || || || || ||||| ||| || | | || Sbjct 252191 AATATCTACAGGAGGGGCAGCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATA 252249 Query 84883 GAGTTGGAATCATAAGAGTTCCAAACCAACCAA 84915 || || ||||| | | |||||||| |||| Sbjct 252250 AGGTAGGGATCATCAAAACACCAAACCATCCAA 252282 >seq264 Length=551193 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 84264 TTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTA 84323 || || ||||| || ||||||||||| ||||||| | || || ||||||||||| Sbjct 292057 TTTTAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTA 291998 Query 84324 GTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCA 84383 ||||| | ||| | | |||||| || | ||||| ||||| ||| |||||| | || Sbjct 291997 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCG 291938 Query 84384 CCGAATACACCAGCAACTCCCAACATG 84410 |||||||||||||| || || ||| || Sbjct 291937 CCGAATACACCAGCTACACCTAACGTG 291911 >seq318 Length=400206 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 || || ||||| | |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 349294 GGAAAATTATGAGTGTTACGTTTATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 349235 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 ||| ||||| || || | ||||| ||| ||| || | || || || ||| Sbjct 349234 GTATCAGCCCAAGTGTTAATTACACGACCTTGAGAATCAACGACGGATTGGTTAAAATTA 349175 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 |||| ||| | ||| || |||| || || | ||| | | |||||| || || || Sbjct 349174 AATCAATTTAAATTGAAAGCCACAGTACTGATACCTAACACGATAAACCAGATACCTACT 349115 Query 84165 ACTGGCCAAGCAGCCAAGAA 84184 || || |||||||| ||||| Sbjct 349114 ACAGGTCAAGCAGCTAAGAA 349095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571077767409920