Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1210 282 5e-71 seq520 255 7e-63 seq92 102 9e-17 seq6 82.4 9e-11 >seq1210 Length=122563 Score = 282 bits (312), Expect = 5e-71 Identities = 588/874 (67%), Gaps = 9/874 (1%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| ||| |||| | || ||||| || |||||||| |||| | || || | Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||| ||||| | |||||||| ||||| | || | || | | Sbjct 43068 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACACAA 43009 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | |||||| || ||||| | |||||| |||||| ||||| ||||||||| | ||| Sbjct 43008 CAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACTAA 42949 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 ||| || || || || ||||||| || || | || || || | ||| Sbjct 42948 AGCGCAAGGAAGCGCTTCGCAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCACAAT 42889 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | || | ||||| || | | | | | | | | |||||||| ||||| Sbjct 42888 CGTCTTCACACGCTCTTCGCTAAGTTTCTTTCTCAAAAGCGAATAAATCAAACAAGCAAA 42829 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||||||||| ||||| ||||| | || | || || ||||| |||||||||||||| Sbjct 42828 ATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCAT 42769 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 | || | |||||| | |||||| || | | || |||||| || ||||||||||| Sbjct 42768 TAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAGAAAAATATACCTTC 42709 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 || ||||||||||| | ||||| || | | |||| || |||||||| Sbjct 42708 AACACAAGCAAAAGCAACGATCCTTTCAGCAAA---TGAATCAGATGAATCGATCCATTT 42652 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA---G 19205 || ||||||||||| |||||| | | ||| || || || || || | || ||| | | Sbjct 42651 CATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACAAACG 42592 Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 || | | |||| ||| ||| || | ||| | || ||||| | ||| |||||||| || Sbjct 42591 ATTCTT---CTCAACTGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGA 42535 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||||||||| || || || ||||| |||||||| ||| | || |||| | || || Sbjct 42534 ATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTGAGACTTGAAC 42475 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 ||| | |||||| | | | ||| || || || || || ||| ||||| || Sbjct 42474 TTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAGAA 42415 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAAT 19445 || | || ||| ||||| || ||| | ||||| | ||||| | || || Sbjct 42414 GGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATGAAG 42355 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||||| |||||||| |||||||| | ||||| |||||||| || |||||||| ||||| Sbjct 42354 ATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTACAT 42295 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATA 19539 | ||| || | | | ||||| || || || ||| Sbjct 42294 TTCCCAGATTTTAGGGTATTGAATTGGGAACATA 42261 >seq520 Length=294854 Score = 255 bits (282), Expect = 7e-63 Identities = 582/874 (67%), Gaps = 9/874 (1%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| |||||||| |||| | || ||||| || |||||||| |||| | ||| || | Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| ||||||| ||||| | |||||||| |||||| | || | ||| | Sbjct 261861 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCACAACCAAGTTCACCCAA 261920 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || |||||| || ||||| | ||||||| |||||| ||||| |||||||| | || Sbjct 261921 TAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCAA 261980 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||| || || || || ||||||| || || | || || || | ||| Sbjct 261981 AGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACAAT 262040 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 || | || | |||||| || | | | | | | | | | ||||| ||||| Sbjct 262041 AGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCAAA 262100 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||||||||| || || ||||| | || | || || ||||| |||||||||||||| Sbjct 262101 ATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCAT 262160 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 | || | |||||| | ||| || || ||| || || || || ||||||||||| Sbjct 262161 TAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTACCGGAGAAAAATATACCTTC 262220 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 || ||||||||||| | |||||| || | | |||| || |||||||| Sbjct 262221 AACACAAGCAAAAGCAACGATTCTTTCAGCAAA---TGAATCAGATGAATCGATCCATTT 262277 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA---G 19205 || ||||||||||| ||||| | ||| || || || || || | || ||||| | Sbjct 262278 CATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAAACG 262337 Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 || | | || | ||| || | ||| | || ||||| | ||| |||||||| || Sbjct 262338 ATTCTT---TTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGA 262394 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 |||||| ||||| || || ||||| || |||||||| | ||| || | | || || Sbjct 262395 ATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGAAC 262454 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 ||| | |||||| || | | ||| || ||||| || || || ||||| || Sbjct 262455 TTCTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAGAA 262514 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAAT 19445 || | || ||| || || || ||| | ||||| | ||||| | | || Sbjct 262515 AGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGAAG 262574 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||||| || | ||| |||||||| ||||||| || ||||| || |||||||| ||||| Sbjct 262575 ATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTACAT 262634 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATA 19539 | ||| || | | | ||||| || || || ||| Sbjct 262635 TTCCCAAATTTTAGGGTATTGAATCGGGAACATA 262668 >seq92 Length=773687 Score = 102 bits (112), Expect = 9e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || || ||||| | ||| | |||||| | || | || | |||||||| ||||||||| Sbjct 23836 CCCCCCTGATCAACATAACGGGCAGTGTCATTGAACACACGCAACATTGGAACAATACCA 23777 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||| ||||| ||| || | ||| ||| || ||| Sbjct 23776 TTAGAAGTCCCATTTGTTCCACGAATGTAACTGCCATAGGCACGTATGTTATGAACAGAA 23717 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || |||| || | ||||||| || || ||||||||||| Sbjct 23716 ACACCAATTCCTCCAGCAGATTTACTAATGACAGCACACTCCTTCAGAGTATCATAAATC 23657 Query 48540 CCTTCTATACTATCATCTATCATA 48563 || || |||||||| ||| ||||| Sbjct 23656 CCCTCAATACTATCCTCTTTCATA 23633 >seq6 Length=1263909 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||||||||| || || ||||| |||||| || | |||||| || ||||| | | Sbjct 1160352 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 1160411 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 || ||||| | |||||| ||||| | ||||||||| Sbjct 1160412 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATAT 1160446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561916109103360