Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq2319 309 9e-80 seq1296 127 6e-25 seq219 118 3e-22 seq318 86.0 2e-12 >seq2319 Length=57875 Score = 309 bits (342), Expect = 9e-80 Identities = 408/566 (72%), Gaps = 0/566 (0%) Strand=Plus/Minus Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278 ||||| ||||| | || || | || || || || ||| ||||| |||||||| || Sbjct 18564 GCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGA 18505 Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 |||||||||||||| ||||||||| | ||||| || || || |||||||| || ||||| Sbjct 18504 ATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCAT 18445 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCAC 26398 || || || ||| ||||| ||||| || ||||| || | || ||| |||||||||| Sbjct 18444 CCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAC 18385 Query 26399 GGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTAT 26458 || ||||| ||||| | || ||||| ||||| | | || |||| | Sbjct 18384 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAA 18325 Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 26518 || || | || || ||||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 18324 GGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTT 18265 Query 26519 GGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTT 26578 || |||| || || || || || ||||| || ||| |||||| | |||||||| || Sbjct 18264 GGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 18205 Query 26579 GCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTT 26638 ||| ||||||| || || || || ||| | || | | |||||| | || ||||| || Sbjct 18204 GCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGTATCAGTACTATGGCTTTC 18145 Query 26639 AACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCT 26698 || ||||||| ||||| |||||||| || || || ||| | | || |||| Sbjct 18144 AATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTGTAATTAAC 18085 Query 26699 ACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAAT 26758 || ||||||||| | | ||||| |||||||| || | ||||||||||| || ||||| Sbjct 18084 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 18025 Query 26759 GCTCATAACTTTCCACTTGACTTAGC 26784 |||||||| || || || ||| |||| Sbjct 18024 GCTCATAATTTCCCTCTAGACCTAGC 17999 >seq1296 Length=110557 Score = 127 bits (140), Expect = 6e-25 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 26261 GATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 26320 ||||| |||||||| || |||||||||||||| ||||||||| | ||||| || || || Sbjct 75574 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 75515 Query 26321 CATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCT 26380 |||||||| || ||||| || || || ||| ||||| ||||| || ||||| || | Sbjct 75514 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 75455 Query 26381 CTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTC 26415 || ||| |||||||||||| ||||| ||||| Sbjct 75454 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTC 75420 >seq219 Length=535087 Score = 118 bits (130), Expect = 3e-22 Identities = 153/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 25844 GGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACT 25902 |||||||| || || | ||||| || |||| | | || ||| | ||| ||||| | Sbjct 252280 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTAT 252222 Query 25903 TGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTC 25962 || ||||| || || || ||||||||||| ||||| || |||||||| ||||| || || Sbjct 252221 CGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATC 252162 Query 25963 GTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGG 26022 || | ||||||||||||||||| || || || | | || | ||| || || || Sbjct 252161 TCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATTGG 252102 Query 26023 ACTACATTTTTACCCGATCTGGGAAGCTG 26051 | || ||||||||||| |||||||||| Sbjct 252101 TTTGCACTTTTACCCGATATGGGAAGCTG 252073 >seq318 Length=400206 Score = 86.0 bits (94), Expect = 2e-12 Identities = 144/202 (71%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 26574 TTCTT-GCTACTTGGCCGGTTGTTGGCATATGGCTGA-CATCTATGGGTATCTGCACAAT 26631 ||||| ||| |||| || || || || || ||| | | | | | | |||||| | || | Sbjct 349095 TTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGT-TAGGTATCAGTACTGT 349153 Query 26632 GGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGAT 26691 ||| || || ||||| | ||||| |||||||| || || || ||| | | || | Sbjct 349154 GGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTGT 349213 Query 26692 AATACCTACATGGGCTGATG-TATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACG 26750 ||| || ||||||||| |||||| ||| |||||||| || | ||||||||||| Sbjct 349214 AATTAACACTTGGGCTGATACTATTAA-CCGTGCTAACCTTGGTATGGAAGTTATGCATA 349272 Query 26751 AGCGTAATGCTCATAACTTTCC 26772 | ||||| ||||||| ||||| Sbjct 349273 AACGTAACACTCATAATTTTCC 349294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146678617080576