Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq2319 370 3e-98 seq1296 147 7e-31 seq219 123 7e-24 seq318 100 9e-17 seq145 89.7 2e-13 >seq2319 Length=57875 Score = 370 bits (410), Expect = 3e-98 Identities = 438/593 (74%), Gaps = 0/593 (0%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| | || |||||||| || ||||| || || |||||||| ||||||||||||||||| Sbjct 17990 TCAACCGCAGCTAGGTCTAGAGGGAAATTATGAGCGTTACGTTCATGCATAACTTCCATA 18049 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | || |||||||||| ||| |||||||| || | || | || | |||||| Sbjct 18050 CCAAGGTTAGCACGGTTAATAATATCAGCCCAGGTGTTAATTACACGACCTTGAGAATCA 18109 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 ||||| || || || || ||||| || || | ||| ||||||||||| || || | Sbjct 18110 ACGACGGATTGGTTAAAATTAAATCCATTTAAATTGAAAGCCATAGTACTGATACCTAAC 18169 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 ||||||| ||| || | || ||||||||||| ||||||||||||||| || Sbjct 18170 GCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAG 18229 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || ||||| || |||||||| | || ||||| || |||||||| || ||||| Sbjct 18230 TTGTTGAAACTAGCGTATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATA 18289 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 ||||| || ||||| ||||| |||||| | || || | ||| ||||||| | || Sbjct 18290 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTA 18349 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383 ||||| | || | ||||| || | |||||||||||| ||||| | || Sbjct 18350 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCG 18409 Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 36443 |||||||| || || ||||| | ||| || |||||||||||||| ||||| || || ||| Sbjct 18410 CCGAATACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCC 18469 Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503 ||||| |||| |||||| |||||||| || || || || |||||||||||||| || || Sbjct 18470 TGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAAG 18529 Query 36504 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 36556 || || || |||| ||||||| ||||| || ||| || |||||||| || Sbjct 18530 CTTCCCTGACCAATTGGGTAGATCAAGAAAACTGCAGTAGCAGCTGCAACTGG 18582 >seq1296 Length=110557 Score = 147 bits (162), Expect = 7e-31 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 36265 TATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTG 36324 || | || ||||| ||||| |||||| | || || | ||| ||||||| | || | Sbjct 75343 TANAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAG 75402 Query 36325 TTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCAC 36384 |||| | || | ||||| || | |||||||||||| ||||| | || | Sbjct 75403 TTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGC 75462 Query 36385 CGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCT 36444 ||||||| || || ||||| | ||| || |||||||||||||| ||||| || || |||| Sbjct 75463 CGAATACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCT 75522 Query 36445 GAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAA 36502 |||| |||| |||||| |||||||| || || || || |||||||||||||| || || Sbjct 75523 GAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAA 75580 >seq219 Length=535087 Score = 123 bits (136), Expect = 7e-24 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 36701 GGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGAT 36760 || |||||||||||| || ||||| ||||| | ||| || || || | || | || Sbjct 252068 GGATGCAGCTTCCCATATCGGGTAAAAGTGCAAACCAATAGCCGCAGAAGTAGGAATAAT 252127 Query 36761 TGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACC 36820 || || || || || |||||||| || |||| | ||| || ||||||||||||||||| Sbjct 252128 GGCACCCGAAATTATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACC 252187 Query 36821 ATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAA 36880 ||| ||||| || ||||| ||||||| || || || | |||| | | ||| || || Sbjct 252188 ATCAATATCTACAGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAA 252247 Query 36881 AAGTGCAGGGATCATTAGTACCCCAAACCAccc 36913 | | ||||||||| | || |||||||| || Sbjct 252248 TAAGGTAGGGATCATCAAAACACCAAACCATCC 252280 >seq318 Length=400206 Score = 100 bits (110), Expect = 9e-17 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| | || ||||| || | || || || || | |||||| | ||||||||||||||| Sbjct 349315 TCAACCGCAGCTAGCTCTGGAGGAAAATTATGAGTGTTACGTTTATGCATAACTTCCATA 349256 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | || |||||||||| | | ||||||||||| | || | || | |||||| Sbjct 349255 CCAAGGTTAGCACGGTTAATAGTATCAGCCCAAGTGTTAATTACACGACCTTGAGAATCA 349196 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 ||||| || || || || ||||| | || | ||| ||||||| ||| || || | Sbjct 349195 ACGACGGATTGGTTAAAATTAAATCAATTTAAATTGAAAGCCACAGTACTGATACCTAAC 349136 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAA 36193 || ||| ||| || | || || |||||||| | ||||| || ||| Sbjct 349135 ACGATAAACCAGATACCTACTACAGGTCAAGCAGCTAAGAAGAGATATAA 349086 >seq145 Length=649883 Score = 89.7 bits (98), Expect = 2e-13 Identities = 124/174 (71%), Gaps = 5/174 (3%) Strand=Plus/Plus Query 36456 ATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 36515 ||||| |||||||| | || || || |||||||||||||| | || || || || ||| Sbjct 132188 ATAAAGTTGAAAGTACTAGAGATTCCCAGAGGCATACCATCTAAAAAGCTTCCCTGACCA 132247 Query 36516 AAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACAT 36575 | || |||| |||||| || ||| | | ||| || |||||||| || ||| Sbjct 132248 ATTGGATAGATTAAGAA-----AAACTGCAGTAGTAACTGGAGCTGAATATGCAACAGCA 132302 Query 36576 ATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 36629 ||||| || | |||||| | | | |||| |||||||| | || |||| |||| Sbjct 132303 ATCCAAGGGCGCATACCCAAACGAAAACTTAGTTCCCACTTACGACCCATGTAA 132356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150405403020096