Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq2319 378 2e-100 seq1296 156 1e-33 seq219 120 9e-23 seq318 104 7e-18 seq145 102 2e-17 >seq2319 Length=57875 Score = 378 bits (418), Expect = 2e-100 Identities = 444/596 (74%), Gaps = 6/596 (1%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| | || ||||| || || ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 17990 TCAACCGCAGCTAGGTCTAGAGGGAAATTATGAGCGTTACGTTCATGCATAACTTCCATA 18049 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 |||||||| |||||||| | | ||| ||||| ||| || | | ||| ||| ||| Sbjct 18050 CCAAGGTTAGCACGGTTAATAATATCAGCCCAGGTGTTAATTACACGACCTTGAGAATCA 18109 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 ||||| || || || || ||||| || || | ||| ||||||||||| ||| || | Sbjct 18110 ACGACGGATTGGTTAAAATTAAATCCATTTAAATTGAAAGCCATAGTACTGATACCTAAC 18169 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | ||||| ||| || | || || ||||||| ||| ||||||||||||||| ||| Sbjct 18170 GCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAG 18229 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || ||||| || |||||||| | || ||||| || |||||||| || ||||| Sbjct 18230 TTGTTGAAACTAGCGTATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATA 18289 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545 ||||| |||||||||||||| |||||| | || || | ||| ||| | | || Sbjct 18290 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTA 18349 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCA 5605 ||||| | || | |||||| || | || ||||||||| ||| | | || Sbjct 18350 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCG 18409 Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 |||||||| ||||| ||||| | |||||| |||||||||||||| ||||| || || ||| Sbjct 18410 CCGAATACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCC 18469 Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725 || ||||| | ||||||||| |||||||||||||| || ||||||||||||| |||||| Sbjct 18470 TGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCAT--CTGAAA 18527 Query 5726 --CTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGG 5778 |||||||| || | ||||| | || || |||| |||| || || ||||| || Sbjct 18528 AGCTTCCCTGACCAATTGGGTAGATCAAGAAAACTGCAGTA-GCAGCTGCAACTGG 18582 >seq1296 Length=110557 Score = 156 bits (172), Expect = 1e-33 Identities = 180/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 5487 TATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTG 5546 || | |||||||||||||| |||||| | || || | ||| ||| | | || | Sbjct 75343 TANAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAG 75402 Query 5547 TTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCAC 5606 |||| | || | |||||| || | || ||||||||| ||| | | || | Sbjct 75403 TTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGC 75462 Query 5607 CGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCT 5666 ||||||| ||||| ||||| | |||||| |||||||||||||| ||||| || || |||| Sbjct 75463 CGAATACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCT 75522 Query 5667 GGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAAC 5726 | ||||| | ||||||||| |||||||||||||| || ||||||||||||| |||||| Sbjct 75523 GAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCAT--CTGAAAA 75580 Query 5727 TT 5728 || Sbjct 75581 TT 75582 >seq219 Length=535087 Score = 120 bits (132), Expect = 9e-23 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 5927 GCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCT 5986 || |||||||| || || || ||||| || ||||| || || | || | || ||| Sbjct 252072 GCAGCTTCCCATATCGGGTAAAAGTGCAAACCAATAGCCGCAGAAGTAGGAATAATGGCA 252131 Query 5987 CCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCG 6046 || || || || |||||||| || ||||||||||| | || || ||||| || || || Sbjct 252132 CCCGAAATTATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCA 252191 Query 6047 ATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGT 6106 || || || || || ||||| | ||| || | |||||| ||| ||||||||| || | Sbjct 252192 ATATCTACAGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAG 252251 Query 6107 GCGGGTATCATTAAGACACCAAACCACCC 6135 | || ||||| || ||||||||||| || Sbjct 252252 GTAGGGATCATCAAAACACCAAACCATCC 252280 >seq318 Length=400206 Score = 104 bits (114), Expect = 7e-18 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| | || ||||| || | || || || |||| || |||| ||||| ||||||||| Sbjct 349315 TCAACCGCAGCTAGCTCTGGAGGAAAATTATGAGTGTTACGTTTATGCATAACTTCCATA 349256 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 |||||||| |||||||| | ||| ||||||||| || | | ||| ||| ||| Sbjct 349255 CCAAGGTTAGCACGGTTAATAGTATCAGCCCAAGTGTTAATTACACGACCTTGAGAATCA 349196 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 ||||| || || || || ||||| | || | ||| ||||||| ||| ||| || | Sbjct 349195 ACGACGGATTGGTTAAAATTAAATCAATTTAAATTGAAAGCCACAGTACTGATACCTAAC 349136 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAA 5415 | ||| ||| || | || || || |||| ||| | ||||| || ||| Sbjct 349135 ACGATAAACCAGATACCTACTACAGGTCAAGCAGCTAAGAAGAGATATAA 349086 >seq145 Length=649883 Score = 102 bits (112), Expect = 2e-17 Identities = 137/189 (72%), Gaps = 9/189 (5%) Strand=Plus/Plus Query 5678 ATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCG 5737 |||||||| ||||||| |||||| || |||||||||||||| || |||||||| || Sbjct 132188 ATAAAGTTGAAAGTACTAGAGATTCCCAGAGGCATACCATCTAAAAAGCTTCCCTGACCA 132247 Query 5738 AAAGGGTATACTAA-AAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGC 5795 | || || | ||| ||| |||| |||| | ||| || ||||||||||| || Sbjct 132248 ATTGGATAGATTAAGAAAAACTGCAGTA-------GTAACTGGAGCTGAATATGCAACAG 132300 Query 5796 AAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTG 5855 |||||| || ||||| || || | |||| |||||||| | || |||| |||| | Sbjct 132301 CAATCCAAGGGCGCATACCCAAACGAAAACTTAGTTCCCACTTACGACCCATGTAACAAG 132360 Query 5856 CGATACCAA 5864 | | ||||| Sbjct 132361 CTACACCAA 132369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152599888131264