Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq2319 372 9e-99 seq1296 147 7e-31 seq219 127 6e-25 seq318 96.9 1e-15 seq145 84.2 7e-12 >seq2319 Length=57875 Score = 372 bits (412), Expect = 9e-99 Identities = 433/584 (74%), Gaps = 0/584 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||| || || |||||||| ||||||||||||||||| || | || Sbjct 17999 GCTAGGTCTAGAGGGAAATTATGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTA 18058 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| ||| |||||||| || | || | || | ||||||||||| || Sbjct 18059 GCACGGTTAATAATATCAGCCCAGGTGTTAATTACACGACCTTGAGAATCAACGACGGAT 18118 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || || || ||||| || || | ||| ||||||||||| || || | ||||||| | Sbjct 18119 TGGTTAAAATTAAATCCATTTAAATTGAAAGCCATAGTACTGATACCTAACGCGGTAAAC 18178 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| ||||||||||||||| ||| || || || Sbjct 18179 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAA 18238 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 ||||| || |||||||| | || ||||| || |||||||| || ||||| ||||| || Sbjct 18239 CTAGCGTATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTT 18298 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | ||| ||||||| | || ||||| | Sbjct 18299 TCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAGTTTCCCTG 18358 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | |||||||||||| ||||| | || |||||||| Sbjct 18359 ATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGCCGAATACA 18418 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || ||||| | ||| || |||||||||||||| ||||| || || |||||||| ||| Sbjct 18419 CCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCTGAAATACA 18478 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | |||||| |||||||| || || || || |||||||||||||| || || || || || Sbjct 18479 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGA 18538 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 26036 |||| ||||||| ||||| || ||| || |||||||| || Sbjct 18539 CCAATTGGGTAGATCAAGAAAACTGCAGTAGCAGCTGCAACTGG 18582 >seq1296 Length=110557 Score = 147 bits (162), Expect = 7e-31 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 25745 TATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTG 25804 || | || ||||| ||||| |||||| | || || | ||| ||||||| | || | Sbjct 75343 TANAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAG 75402 Query 25805 TTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCAC 25864 |||| | || | ||||| || | |||||||||||| ||||| | || | Sbjct 75403 TTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGC 75462 Query 25865 CGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCT 25924 ||||||| || || ||||| | ||| || |||||||||||||| ||||| || || |||| Sbjct 75463 CGAATACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCT 75522 Query 25925 GAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAA 25982 |||| |||| |||||| |||||||| || || || || |||||||||||||| || || Sbjct 75523 GAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAA 75580 >seq219 Length=535087 Score = 127 bits (140), Expect = 6e-25 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26181 GGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGAT 26240 || |||||||||||| || ||||| ||||| | ||| || || ||| | || | || Sbjct 252068 GGATGCAGCTTCCCATATCGGGTAAAAGTGCAAACCAATAGCCGCAGAAGTAGGAATAAT 252127 Query 26241 TGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACC 26300 || || || || || |||||||| || |||| | ||| || ||||||||||||||||| Sbjct 252128 GGCACCCGAAATTATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACC 252187 Query 26301 ATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAA 26360 ||| ||||| || ||||| ||||||| || || || | |||| | | ||| || || Sbjct 252188 ATCAATATCTACAGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAA 252247 Query 26361 AAGTGCAGGGATCATTAGTACCCCAAACCACCC 26393 | | ||||||||| | || |||||||| || Sbjct 252248 TAAGGTAGGGATCATCAAAACACCAAACCATCC 252280 >seq318 Length=400206 Score = 96.9 bits (106), Expect = 1e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25463 GAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAA 25522 |||| || || || | |||||| | ||||||||||||||| || | || |||||||||| Sbjct 349296 GAGGAAAATTATGAGTGTTACGTTTATGCATAACTTCCATACCAAGGTTAGCACGGTTAA 349237 Query 25523 GAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGT 25582 | | ||||||||||| | || | || | ||||||||||| || || || || | Sbjct 349236 TAGTATCAGCCCAAGTGTTAATTACACGACCTTGAGAATCAACGACGGATTGGTTAAAAT 349177 Query 25583 TAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAG 25642 |||| | || | ||| ||||||| ||| || || | || ||| ||| || | Sbjct 349176 TAAATCAATTTAAATTGAAAGCCACAGTACTGATACCTAACACGATAAACCAGATACCTA 349117 Query 25643 TGACGGGCCAAGCAGCCAGGAAGAAATGTAA 25673 || || |||||||| | ||||| || ||| Sbjct 349116 CTACAGGTCAAGCAGCTAAGAAGAGATATAA 349086 >seq145 Length=649883 Score = 84.2 bits (92), Expect = 7e-12 Identities = 123/174 (71%), Gaps = 5/174 (3%) Strand=Plus/Plus Query 25936 ATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 25995 ||||| |||||||| | || || || |||||||||||||| | || || || || ||| Sbjct 132188 ATAAAGTTGAAAGTACTAGAGATTCCCAGAGGCATACCATCTAAAAAGCTTCCCTGACCA 132247 Query 25996 AAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACAT 26055 | || |||| |||||| || ||| | | ||| || |||||||| || ||| Sbjct 132248 ATTGGATAGATTAAGAA-----AAACTGCAGTAGTAACTGGAGCTGAATATGCAACAGCA 132302 Query 26056 ATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||||| || | ||| || | | | |||| |||||||| | || |||| |||| Sbjct 132303 ATCCAAGGGCGCATACCCAAACGAAAACTTAGTTCCCACTTACGACCCATGTAA 132356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151944101764224