Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1210 187 3e-42 seq520 183 4e-41 seq6 82.4 9e-11 >seq1210 Length=122563 Score = 187 bits (206), Expect = 3e-42 Identities = 359/527 (68%), Gaps = 7/527 (1%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| |||||||||||||| | ||||| || | || | || || ||||| ||| Sbjct 42839 AAACAAGCAAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTT 42780 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 || || ||||||||||| | |||||||| ||| || ||||| ||| |||||| || Sbjct 42779 AAACCAGGCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAGAAA 42720 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 || ||||||||||| ||||| || || | | | | | || |||| | | | Sbjct 42719 AATATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAA---TGAATCAGATGAA 42663 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 |||||||| | | |||||| || || | ||| ||| ||| ||||||||||| Sbjct 42662 TCGATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCA 42603 Query 37413 TTTAAGAGAAAGtttttttCTTCACT--ATCTGTTATATAAGTATCAATTAGTAAACTAT 37470 | || | || || |||| ||| ||| | |||||||| ||||| | | ||||| Sbjct 42602 TGAAACA--AACGATTCTTCTCAACTGAATCATTGATATAAGTCTCAATCAAGAGACTAT 42545 Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 |||||||||| |||||||| || || || ||||| || || || ||| | || || | Sbjct 42544 ACATTTCAGAATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTG 42485 Query 37531 ATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590 | | |||||| || || | || || || | || || || || || || || Sbjct 42484 AGACTTGAACTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAG 42425 Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCC 37650 | |||||||| |||||||| | | ||||| || | ||| | | | || || |||| Sbjct 42424 CGGCAAAGAAGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCC 42365 Query 37651 AATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 | | || || ||||| |||||||| ||||| || ||||||| ||| Sbjct 42364 AGTGATGAAGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAA 42318 >seq520 Length=294854 Score = 183 bits (202), Expect = 4e-41 Identities = 541/831 (65%), Gaps = 5/831 (1%) Strand=Plus/Plus Query 36867 CTATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTT 36926 ||||||||||| ||| |||||||| ||||| || | || ||||| || || || Sbjct 261784 CTATTCATAACAGAAGCTTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTC 261843 Query 36927 CCTTCTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTA 36986 || | ||||| || |||||| ||||||| ||||| |||||| || | | | Sbjct 261844 CCCTGAAGTGAAATCAATTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCA 261903 Query 36987 CATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCA 37046 || | ||| || | ||||| |||||||| || || |||| || ||| | ||| Sbjct 261904 CAACCAAGTTCACCCAATAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCA 261963 Query 37047 TAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATT 37106 ||| || |||| | |||| || || || |||| | | || ||| Sbjct 261964 CCGTTCATTCCAACCAAAGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCA 262023 Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166 || ||||| ||| ||| | | | |||||| | | | | | ||| | Sbjct 262024 ACCGCATCACGAACAATAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAA 262083 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 | | |||||| |||||||||||||| | |||||| || | || | || || ||| Sbjct 262084 TAAAGTAAACAAGCAAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAA 262143 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || ||||| || ||||||||||| | |||||||| |||||| |||| ||| || Sbjct 262144 AAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTACCG 262203 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 || || || ||||||||||| ||||| || || | | | | | || |||| | Sbjct 262204 GAGAAAAATATACCTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAA---TGAATCA 262260 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 | | |||||||| | | |||||| || || || ||| ||| || ||| Sbjct 262261 GATGAATCGATCCATTTCATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCA 262320 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 ||||| | || | | || ||||| | ||| | |||||||| ||||| | | | Sbjct 262321 ATTGCATGAAATAAACGATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGA 262380 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA-ACACCTAGC 37525 |||||||||||||| ||||| |||||||| || ||||| ||||| ||||| ||| | || Sbjct 262381 CTATACATTTCAGAATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGT-GC 262439 Query 37526 TTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585 ||||| | |||||| || || | || || || | || || ||||| || || Sbjct 262440 CTCAGAGACTTGAACTTCTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTC 262499 Query 37586 ACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTT 37645 || ||||||||||||||||| | | || || || | ||| | | | || || Sbjct 262500 GGAGGCGGCAAAGAAAGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTT 262559 Query 37646 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 ||||| | | || ||||| ||| | ||| ||||| || | ||||| || Sbjct 262560 GTTCCAGTGAGGAAGATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAA 262610 >seq6 Length=1263909 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||||||||| || | ||| ||||||||| || | |||||| || || || | Sbjct 1160352 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 1160411 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGC 37273 ||||||||||| ||||| ||||||| ||| ||||| || Sbjct 1160412 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGC 1160449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592113753800960