Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1436 116 3e-21 seq933 105 5e-18 seq1740 102 6e-17 seq322 102 6e-17 seq37 100 2e-16 seq1039 93.3 3e-14 seq1642 86.0 5e-12 >seq1436 Length=88924 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| |||||||| ||||||| ||| | | | || || | ||| ||||||||||| Sbjct 38573 TCTTTCTGAATATTATAATCAGCAAGAGTCCTTCCATCCTCAAGCTGTTTACCGGCAAAG 38632 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| |||||| ||||| | |||| |||||||| || |||||| || ||| | Sbjct 38633 ATCAATCGCTGCTGATCAGGTGGAATCCCCTCCTTATCTTGAATCTTCGCCTTCACATTA 38692 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || ||||||||| | ||||| || || |||||||| || || ||| Sbjct 38693 TCAATAGTATCAGAACTCTCCACCTCAAGAGTAATAGTCTTCCCCGTCAACGTCTTCACA 38752 Query 48756 AAAATCTGCATC 48767 |||||||||||| Sbjct 38753 AAAATCTGCATC 38764 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| |||||||| ||||||| ||| | || | || || | ||| ||||||||||| Sbjct 6846 TCTTTCTGAATATTATAATCAGCAAGAGTCCGTCCATCCTCAAGCTGTTTACCGGCAAAG 6905 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| |||||| ||||| | |||| ||||||||||| |||||| || || | Sbjct 6906 ATCAATCGCTGCTGATCAGGTGGAATACCCTCCTTGTCTTGAATCTTCGCCTTCACGTTA 6965 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || ||| ||||| | |||||||| || || ||||| || || ||| Sbjct 6966 TCAATAGTATCAGAACTCTCAACCTCAAGAGTAATCGTCTTCCCGGTCAACGTCTTCACA 7025 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 7026 AAAATCTGCAT 7036 >seq933 Length=173040 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| |||||||||||||| | | | | ||| | || |||||||||||||||||||| Sbjct 30343 TCTTTCTGAATATTGTAATCTGCCAAAGTACGACCATCCTCCAACTGCTTACCGGCAAAA 30284 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| || || | ||||| |||||||| || ||||||| ||| ||| | Sbjct 30283 ATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGAATCTTTGCTTTCACATTA 30224 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || |||||||||| ||||| || || || || | || || ||| Sbjct 30223 TCGATTGTATCAGAGCTTTCCACCTCCAAGGTAATAGTCTTCCCAGTAAGGGTCTTCACA 30164 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 30163 AATATTTGCAT 30153 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||||||||||| ||||| ||| | || || ||| ||| ||||| || |||||||| | Sbjct 29240 GCCGCCCCTTAACCGCAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGC 29181 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || ||||| || ||||| ||||| || || | || ||||| | || Sbjct 29180 AAGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGG 29121 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || || |||||||| ||||| ||| || | | | || || |||||| Sbjct 29120 AATCCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTGTCTATGGTATCAGAACTCTCCAC 29061 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || ||||| || ||||| ||||| || ||||| |||||| Sbjct 29060 CTCAAGGGTGATGGTTTTGCCAGTCAATGTTTTCACGAAAATTTGCATC 29012 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||||||| || || || || || || |||||||||| ||| ||| | || || Sbjct 29678 CACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCTTCCATCCTC 29619 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | ||||| || ||||| || || | ||| ||||| | || | || ||||| || Sbjct 29618 AAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCGGGAGGGATACCTTCCTTATCCTG 29559 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| ||| ||| | | | || ||||| ||| ||||| | ||||| || || Sbjct 29558 AATCTTGGCTTTCACATTATCAATAGTATCTGAACTCTCAACCTCTAAAGTAATAGTCTT 29499 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || |||||||||||||| Sbjct 29498 CCCTGTTAAAGTCTTCACAAAAATCTGCAT 29469 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| ||||| || | || || || || ||||| ||||||| ||| | ||| Sbjct 30142 AGCCTCAAAACCAAGTGCAAAGTAGATTCCTTCTGGATATTATAATCAGCCAGAGTACGA 30083 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| |||||||| || || | ||| || || | |||| ||||| Sbjct 30082 CCATCTTCCAACTGCTTCCCGGCAAAAATTAGCCTCTGCTGGTCTGGAGGAATACCCTCT 30023 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| ||| || ||| | | | || || ||| ||||||| || Sbjct 30022 TTATCCTGAATTTTTGCCTTCACATTGTCAATTGTATCGGAACTCTCAACCTCCAATGTT 29963 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || |||||||| ||||| Sbjct 29962 ATGGTCTTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 29925 >seq1740 Length=56962 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || |||||||||| | |||| | || || | |||||| || ||||| Sbjct 42807 TCCTTCTGGATGTTGTAATCAGCCAATGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAA 42866 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| | || || |||| |||| |||||||||||| ||||| ||||||| Sbjct 42867 ATCAACCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTTACATTG 42926 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| ||| ||||||| ||||| ||||| || ||||| || |||||| Sbjct 42927 TCAATCGTGTCTGAACTCTCAACCTCCAAAGTAATGGTTTTCCCTGTCAATGTCTTTACA 42986 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 42987 AAAATCTGCAT 42997 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | || | || | ||| || ||| || || || || |||||||||| Sbjct 22120 GCCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGC 22061 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | || | || |||||||| || |||||||| |||| | |||||||| | ||| Sbjct 22060 CAAGGTCCGGCCATCTTCCAACTGTTTCCCGGCAAAAATCAACCTTTGTTGATCTGGGGG 22001 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| |||||| || ||| | | || ||||| ||| || Sbjct 22000 AATACCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATAGTGTCTGAGCTCTCAAC 21941 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || ||||| || | ||| || |||||||||||||| Sbjct 21940 CTCCAAAGTTATTGTCTTTCCGGTAAGAGTCTTCACAAAAATCTGCAT 21893 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| ||| ||||| || |||||||||| || | || Sbjct 21654 AGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGC 21595 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTC 48667 | || ||||||||||| || ||||| ||||| ||||| || || |||||| | || || Sbjct 21594 CCATCCTCCAACTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGGATC-CCTTC 21536 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||| || |||||| ||| ||| | | | || || ||| || || | || Sbjct 21535 CTTATCTTGAATCTTGGCTTTAACATTGTCTATGGTATCAGAACTCTCAACTTCGAGAGT 21476 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| ||||| || || | || || ||||| || |||||| Sbjct 21475 AATGGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCATC 21436 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 |||||||| | || | || | ||| || ||| || || || || |||||||| | Sbjct 42999 CCGCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 43058 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | |||| | || |||||||| || |||||||| || || | ||| || || | || Sbjct 43059 AAGGTTCGGCCATCTTCCAACTGTTTTCCGGCAAAAATGAGCCTCTGCTGGTCTGGAGGG 43118 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| |||||| | | | ||||| ||| ||| Sbjct 43119 ATACCCTCCTTGTCTTGAATCTTAGCCTTTACATTGTCAATTGTGTCTGAGCTCTCAACC 43178 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| ||||| || || | || || |||||||||||||| Sbjct 43179 TCCAAAGTAATTGTTTTGCCTGTAAGGGTCTTCACAAAAATCTGCAT 43225 >seq322 Length=397916 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||||||||||| ||||| ||| | || || ||| ||| ||||| || |||||||| | Sbjct 312758 GCCGCCCCTTAACCGCAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGC 312817 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || || || || ||||||||||| || || | || ||||| | || Sbjct 312818 AAGGGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATAAGCCTTTGCTGATCAGGTGG 312877 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || || |||||||| ||||| ||| ||| | | | || || |||||| Sbjct 312878 AATCCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCTATGGTATCAGAAATCTCCAC 312937 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || ||||| || ||||| ||||| || ||||| |||||| Sbjct 312938 CTCAAGGGTGATGGTTTTACCGGTCAATGTTTTCACGAAAATTTGCATC 312986 Score = 98.7 bits (108), Expect = 8e-16 Identities = 154/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| || ||| || ||||| || || ||||||| || ||| Sbjct 333420 AGACGCAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCAAGGGTTCTT 333479 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || || ||||| || || | ||| ||||| | ||| | |||||| Sbjct 333480 CCATCCTCAAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGGGGGATTCCCTCC 333539 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||| ||| | | | || ||||| ||| ||||| | ||| Sbjct 333540 TTATCCTGAATCTTAGCTTTCACATTATCGATAGTATCTGAACTCTCAACCTCTAAAGTA 333599 Query 48729 A-TCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | | || ||||| || ||||| || |||||||||||||| Sbjct 333600 AATAGTCTTTCCTGTTAAAGTCTTGACAAAAATCTGCAT 333638 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||||||| || || || || || || |||||||| | ||| ||| | || || Sbjct 312320 CACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAATCTGCTAGGGTTCTTCCATCCTC 312379 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | || || || ||||| || || | ||| ||||| | || | || ||||| || Sbjct 312380 AAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGGGATTCCTTCCTTATCCTG 312439 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| ||| ||| | | | || ||||| ||| ||||| | ||||| || || Sbjct 312440 AATCTTAGCTTTCACATTATCGATAGTATCTGAACTCTCAACCTCTAAAGTAATAGTCTT 312499 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || ||||| || |||||||||||||| Sbjct 312500 TCCTGTTAAAGTCTTCACAAAAATCTGCAT 312529 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 48591 TAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGA 48650 ||||||| ||| | ||| | || ||||||||||| |||||||| || || | ||| || Sbjct 311670 TAATCAGCCAGAGTACGACCATCTTCCAACTGCTTCCCGGCAAAAATTAGCCTCTGCTGG 311729 Query 48651 TCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC 48710 || | |||| ||||| || || ||||||| ||| ||| | | || || || Sbjct 311730 TCTGGAGGAATACCCTCTTTATCTTGAATCTTTGCTTTCACATTGTCAATAGTGTCGGAA 311789 Query 48711 GCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| ||||||| || || || ||||| || | || || |||||||| ||||| Sbjct 311790 CTCTCAACCTCCAAAGTTATGGTCTTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 311845 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| |||| || || || || || || ||||| ||||||| ||| | | | Sbjct 333192 AGCCTCAAAACCAGGTGGAGAGTAGATTCCTTCTGGATATTATAATCAGCCAGAGTACAA 333251 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| |||||||| || || | ||| || ||| |||| ||||| Sbjct 333252 CCATCTTCCAACTGCTTGCCGGCAAAAATTAGCCTCTGCTGGTCCAGAGGAATACCCTCT 333311 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| ||| ||| ||| | | || || | ||| ||||||| || Sbjct 333312 TTATCCTGAATTTTTGCTTTCACATTGTCAATAGTATCGAAACTCTCAACCTCCAAAGTT 333371 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || |||||||| ||||| Sbjct 333372 ATGGTCTTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 333409 >seq37 Length=1182629 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||||||||| |||| || | | | || ||||||||| Sbjct 291737 TGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGC 291796 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| | ||| ||||| ||||| | || ||||| || ||| || Sbjct 291797 TTCCCTGCAAAGATCAACCTCTGCTGATCAGTGGGGATACCTTCCTTATCCTGAATTTTG 291856 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | | || || ||||||||||| ||||| || || || ||| Sbjct 291857 GCCTTCACATTATCAATGGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTACCAGTC 291916 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 ||||| || |||||||||||||| Sbjct 291917 AAAGTCTTAACAAAAATCTGCAT 291939 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | |||| ||| | ||| || || ||| || || ||||||||||| | Sbjct 291941 CCACCCCTCAAACGCAGCACAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCCGCA 292000 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTA-CCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | | || |||||||| ||| || ||||| |||| | ||| ||||| | ||| Sbjct 292001 AGGGTCCTTCCATCTTCCAACTGTTTATCCAGCAAAGATCAACCTCTGCTGATCTGGGGG 292060 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||| || ||||| || ||| | | | ||||| ||||| Sbjct 292061 AATACCCTCCTTATCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCTTTCCAC 292120 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || ||||| |||||||| || ||||| || ||||| Sbjct 292121 CTCCAAGGTTATGGTCTTTCCGGTCAAAGTCTTCACAAATATTTGCAT 292168 >seq1039 Length=240209 Score = 93.3 bits (102), Expect = 3e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| |||||| ||| ||||| ||||||||||||| || | || Sbjct 129313 AGACGGAGCACCAAATGGAGCGTGGACTCCTTTTGGATATTGTAATCAGCAAGGGTACGC 129372 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTC 48667 |||| |||| |||||| || ||||| ||||| ||||| || || |||||| | || || Sbjct 129373 CCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGGATC-CCTTC 129431 Query 48668 CTTGTCGCTAATCTT 48682 ||| || |||||| Sbjct 129432 CTTATCTTGAATCTT 129446 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | || || || ||| || ||||| ||||| |||| || | | Sbjct 128629 AGGCGCAAAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTT 128688 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || ||||| |||| | ||| ||||| | || | |||||| Sbjct 128689 CCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCC 128748 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || ||| || ||| | | | | ||||| || ||||||| ||| Sbjct 128749 TTGTCTTGTATTTTTGCCTTGACATTATCGATCGTATCTGAACTTTCTACCTCCAATGTA 128808 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||||||| || ||||| |||||||| Sbjct 128809 ATGGTCTTTCCTGTCAAAGTCTTCACAAAGATCTGCAT 128846 >seq1642 Length=65368 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | || | || || ||| |||||| ||||| || ||||||| Sbjct 33993 CCTCCCCTCAGACGAAGGACAAGGTGAAGGGTGGACTCTTTCTGAATGTTATAATCAGCC 33934 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || |||| |||||| || ||||| |||| || || || || | ||| Sbjct 33933 AAAGTCCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAATCTTTGCTGGTCTGGGGGG 33874 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||||| |||||| | | || ||||| ||| ||| Sbjct 33873 ATACCTTCTTTGTCCTGTATCTTGGCCTTTACATTGTCAATAGTGTCTGAGCTCTCTACC 33814 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || || | ||| || || ||||||||||| Sbjct 33813 TCCAAGGTAATAGTCTTCCCGGTAAGAGTCTTCACGAAAATCTGCAT 33767 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | || || || ||| || ||||| ||||| |||| ||| | | Sbjct 34212 AGGCGCAAAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTT 34153 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || ||||| |||| | ||||||||| | || | |||||| Sbjct 34152 CCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGTTGATCTGGCGGGATTCCCTCC 34093 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || ||| || ||| | | | | ||||| || ||||| | ||| Sbjct 34092 TTGTCCTGTATTTTTGCCTTCACATTATCTATGGTGTCTGAACTTTCTACCTCTAAGGTA 34033 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || ||||| || ||||| Sbjct 34032 ATGGTCTTTCCAGTCAACGTCTTCACAAAGATTTGCAT 33995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380810279225952