Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq183 118 2e-21 seq749 116 8e-21 seq520 109 1e-18 >seq183 Length=177699 Score = 118 bits (130), Expect = 2e-21 Identities = 260/378 (69%), Gaps = 14/378 (4%) Strand=Plus/Minus Query 150402 TTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTA 150461 |||||||||| ||||| || ||||| | ||||| ||||| || || | || | || Sbjct 59138 TTGGTGAACCGGGTGTCGGAAAAACTGCTGTTGTTGAAGGATTGGCTCAGAGGATTGTTA 59079 Query 150462 ATGGTGATGTTCC-AG-ATTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGC 150519 ||||||||||| || | ||| || |||||| | || ||||| |||||||||| Sbjct 59078 GAGGTGATGTTCCTAGTAATCT-TGCT-GATGTTAGGTTGATTGCTTTGGATATGGGTGC 59021 Query 150520 ATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACA-ATTTGCTAC 150578 ||| |||||| |||||||| | |||||||| ||||| | || || | | | || Sbjct 59020 ATTGGTGGCTGGTGCTAAGTATAGGGGTGAATTTGAAGAGAG-GTTGAAAGCTGTTCTGA 58962 Query 150579 AAGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTA 150635 ||||| | ||||| || | | |||||||| ||||| |||||||| ||| | || Sbjct 58961 AAGAAGTTGAAGAAGCTGAAGGGAAAGTTATTCTTTTCATTGATGAAATTCATCTTGTTC 58902 Query 150636 TGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTC 150695 | ||||||||| ||| | || || ||||| ||| | || |||||| | Sbjct 58901 TTGGTGCTGGTAGAACT---GAAGGATCAATGGATGCTGCTAATCTTTTTAAACCTATGC 58845 Query 150696 TATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACAC 150754 | |||| || || || | ||| || ||||| ||||| || |||||| | || | Sbjct 58844 TTGCTCGTGGACAACTTAGATGT-ATTGGTGCTACAACACTTGAGGAATATAGAAAGTAT 58786 Query 150755 ATTGAAAAAGATGCAGCA 150772 ||||||||||||| ||| Sbjct 58785 GTTGAAAAAGATGCTGCA 58768 >seq749 Length=216319 Score = 116 bits (128), Expect = 8e-21 Identities = 256/378 (68%), Gaps = 18/378 (5%) Strand=Plus/Minus Query 150404 GGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAAT 150463 ||||| |||||||||||||||||| ||||||| || || || || | || | ||| Sbjct 32692 GGTGAGCCAGGTGTTGGTAAAACAGCTGTCGTTGAAGGGTTGGCTCAGAGAATAGTTAAA 32633 Query 150464 GGTGATGTTCC---AGAT-TCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGC 150519 || ||| |||| |||| | | ||| | | | || || ||||| ||||||| || Sbjct 32632 GGAGATATTCCTAGAGATCTATCTGAGGTACGGTTAA----TTGCTTTGGATATGGGAGC 32577 Query 150520 ATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTA 150577 ||| ||||||| |||||||| || ||||| ||||| | || ||||| ||| || Sbjct 32576 ATTAGTTGCTGGTGCTAAGTATATGGGAGAATTTGAAGAGAGGTTGAAGACAGTTT--TA 32519 Query 150578 CAAGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATT 150634 ||||| | |||| || | | ||| |||| ||||| |||||||| || | || Sbjct 32518 AAAGAAGTGGAAGATGCTGAAGGGAAGGTTGTTCTTTTCATTGATGAAATTCAACTTGTT 32459 Query 150635 ATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCT 150694 | ||||||||| ||| || | | ||||| || | || |||||| Sbjct 32458 CTCGGTGCTGGTCGAACTCAAGGAG---CAATGGATGCTGCTAACCTTTTCAAACCTATG 32402 Query 150695 CTATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACAC 150754 || || |||| || || | ||| ||||||||||| ||||||||| | ||| | Sbjct 32401 CTTGCTTGCGGCCAACTTAGATGCATTGGTGCAACAACACTTGATGAATATAGGAAATAT 32342 Query 150755 ATTGAAAAAGATGCAGCA 150772 ||||||| ||||||||| Sbjct 32341 GTTGAAAAGGATGCAGCA 32324 >seq520 Length=294854 Score = 109 bits (120), Expect = 1e-18 Identities = 256/376 (68%), Gaps = 14/376 (4%) Strand=Plus/Plus Query 150404 GGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAAT 150463 ||||| || |||||||||||||| || ||||| || || || || | || | || Sbjct 164012 GGTGAGCCGGGTGTTGGTAAAACGGCCATTGTTGAAGGGTTGGCTCAGAGAATAGTTAGA 164071 Query 150464 GGTGATGTTCC-AG-ATTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCAT 150521 || |||||||| || | ||| || |||||| | || |||| ||||||| |||| Sbjct 164072 GGAGATGTTCCTAGTAATCT-TGCT-GATGTTAGCTTAATTGCTTTAGATATGGGAGCAT 164129 Query 150522 TTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACA 150579 | |||||||||||||||| | || ||||| |||||| | || || | ||| | | Sbjct 164130 TAGTTGCTGGTACTAAGTATAGGGGAGAATTTGAAGAAAGGTTGAAGGCGGTTT--TGAA 164187 Query 150580 AGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTAT 150636 |||| | |||| |||| | |||||| | || || |||||||| ||| | || | Sbjct 164188 AGAAGTTGAAGATGCTGATGGGAAGGTTATTGTTTTTATTGATGAAATTCATCTTGTTCT 164247 Query 150637 GGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCT 150696 ||||||||| ||| | || || ||||| ||| | || || ||| || Sbjct 164248 CGGTGCTGGT-CGA--TGTTCAGGATCAATGGATGCTGCTAATCTTTTCAAGCCTATGCT 164304 Query 150697 ATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACAT 150756 |||| || || || | |||||||||||| || ||||||||| | || | | Sbjct 164305 TGCTCGTGGACAACTTAGATGCATCGGTGCAACGACACTTGATGAATATAGGCAATATGT 164364 Query 150757 TGAAAAAGATGCAGCA 150772 |||||||||||||||| Sbjct 164365 TGAAAAAGATGCAGCA 164380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147187171161152