Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq2319 358 7e-94 seq1296 147 2e-30 seq219 125 8e-24 seq264 91.5 2e-13 seq318 89.7 6e-13 >seq2319 Length=57875 Score = 358 bits (396), Expect = 7e-94 Identities = 427/578 (74%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 || || |||||| |||| || | ||||| || || || || | |||||||| || Sbjct 18564 GCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGA 18505 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || ||||||||||| |||| ||| | || || || || ||||| || || || ||||| Sbjct 18504 ATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCAT 18445 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || || || ||| | || || || ||||||||||| || || || || |||||||||||| Sbjct 18444 CCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAC 18385 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155 ||||| | || |||||| | | ||||| |||||||| || | || || ||| | Sbjct 18384 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAA 18325 Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| | ||||| ||||| ||||| || || || ||||| ||||||||||| || ||| Sbjct 18324 GGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTT 18265 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 || || ||||||||||| || || |||||||||||| ||||| | || |||||||| Sbjct 18264 GGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 18205 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335 ||||| | ||||| || | |||||||| || || | ||| | |||||||| ||| Sbjct 18204 GCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGTATCAGTACTATGGCTTTC 18145 Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATT 163392 || | || || || || || ||||||||||||||||| | |||| || || ||| Sbjct 18144 AATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGT---GTAATT 18088 Query 163393 CCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGT 163452 || ||||| ||||| ||||| | || |||||||||||||||||||| || ||| Sbjct 18087 AACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 18028 Query 163453 AATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 || ||||| || ||||| || ||||| ||||| | ||| Sbjct 18027 AACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq1296 Length=110557 Score = 147 bits (162), Expect = 2e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023 |||||||| || || ||||||||||| |||| ||| | || || || || ||||| || Sbjct 75568 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAAT 75509 Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTT 163083 || || ||||| || || || ||| | || || || ||||||||||| || || || || Sbjct 75508 ATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 75449 Query 163084 AGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAG 163143 ||||||||||||||||| | || |||||| | | ||||| |||||||| || | || Sbjct 75448 AGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAA 75389 Query 163144 TCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGAC 163184 || ||| | ||||| | ||||| ||||| ||||| || Sbjct 75388 TCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 75348 >seq219 Length=535087 Score = 125 bits (138), Expect = 8e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || || Sbjct 252280 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATC 252221 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || ||||| || ||||| |||||||| | || |||||| | || || Sbjct 252220 GCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCT 252161 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || || || ||||| || || || ||||| | |||||| ||| ||||||||| Sbjct 252160 CTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATTGGT 252101 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGAT 162759 | ||||| || || || |||||||| ||| | ||||| Sbjct 252100 TTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGAT 252062 >seq264 Length=551193 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 163051 GGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACT 163110 || || || ||||||||||| || || || || ||||||||||||||||| | || ||| Sbjct 291918 GGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACT 291977 Query 163111 TCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGA 163170 ||| | | ||||| |||||||| || | || || ||| | ||||| | ||||| Sbjct 291978 TCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGT 292037 Query 163171 CAAGAAGAAGAGACTTACAA 163190 ||||| ||||| || || || Sbjct 292038 CAAGAGGAAGAAACCTAAAA 292057 >seq318 Length=400206 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 163268 TCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTA 163327 ||||| | ||||| | ||||| || | |||||||| | | | ||| | ||| Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 163328 TGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGTA 163384 |||| ||||| | || | || || || ||||||||||||||||| | |||| || Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGT- 349211 Query 163385 AAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGC 163444 || ||| |||||||| |||| ||||| | || ||||||||||||||||||| Sbjct 349212 --GTAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGC 349269 Query 163445 ACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 | | ||||| |||| || || || | || || ||||| | ||| Sbjct 349270 ATAAACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552895202530560