Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq2319 307 1e-78 seq432 302 5e-77 seq200 138 1e-27 seq134 118 1e-21 seq318 114 1e-20 seq1868 95.1 1e-14 seq26 95.1 1e-14 >seq2319 Length=57875 Score = 307 bits (340), Expect = 1e-78 Identities = 424/593 (72%), Gaps = 0/593 (0%) Strand=Plus/Minus Query 163291 CCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 163350 || |||||||| || | ||||| ||| || |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 163351 GACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAG 163410 || | ||||| || || |||||||| || ||||||| ||| |||| || || || ||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 163411 CACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCA 163470 || || || || ||||| || || || ||||| || || |||||||| ||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 163471 CTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAA 163530 || ||| || ||||| || | || || ||| | || | || || || ||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 163531 ACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTT 163590 | ||| || || | ||||||| || |||||||| ||||| || || || || || Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 163591 GCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGA 163650 || || ||||| || || || || |||||||||||||| || ||||||||| | Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 163651 AGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGC 163710 | | || |||||||| || || |||||||| || || ||||||||||| || | || Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 163711 GTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGT 163770 | || || ||||| ||||| | || || || || || ||||| ||| || ||||| | Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCT 18103 Query 163771 CAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAA 163830 || |||||||| | ||||| ||||| || | ||||||| ||| || ||||||||| Sbjct 18102 CAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 18043 Query 163831 GTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 163883 ||||||||||| |||||||| || || ||||| || || || ||||| | ||| Sbjct 18042 GTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 302 bits (334), Expect = 5e-77 Identities = 389/534 (73%), Gaps = 2/534 (0%) Strand=Plus/Plus Query 164823 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 164882 |||||| | | |||| ||||||||||| | ||||| |||| || ||||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 164883 CTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATG 164942 | || || || |||| ||| || ||||| |||||||| |||| |||| ||||| ||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 164943 CTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTATCCGTCCTTACAATGCTATTGCGTT 165001 | || || ||||| || || || ||| | | | || ||||| ||||| || || || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATCGCATT 47668 Query 165002 CTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAG 165061 ||| ||||| |||||||||||||| || |||||||| || |||||||||||||| | Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 165062 TTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCA 165121 |||||| || || || ||||| || ||||| || ||| ||||| | | || | || Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCA 47788 Query 165122 AGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGG 165181 ||| || || || ||||| | ||||| || ||||||||||| ||||| ||| | ||||| Sbjct 47789 AGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGG 47848 Query 165182 AGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGG 165241 | || | ||| ||||||||||| | || || |||||||| |||| || ||||| Sbjct 47849 CGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGG 47908 Query 165242 AGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTAT 165301 || |||||||| || || ||| | | || || | ||||| |||||||| || Sbjct 47909 GGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAAT 47968 Query 165302 GGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAA 165355 |||||| || |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 47969 GGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq200 Length=959787 Score = 138 bits (152), Expect = 1e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 165375 ATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCT 165434 ||||| ||||| || || | ||| | |||| || |||| | | ||||| || Sbjct 265389 ATGTTATTTGTCCCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCC 265330 Query 165435 CTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAA 165494 || ||||| ||||| || || ||||| ||| || ||| | ||||| |||||||| ||| Sbjct 265329 CTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 265270 Query 165495 TTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCA 165554 |||||||| |||||||||||||| || || || || ||||| | ||||| ||| |||| Sbjct 265269 TTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCG 265210 Query 165555 CCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGT 165598 || ||||| || ||||||||| |||| ||||| || || || Sbjct 265209 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGT 265166 >seq134 Length=619377 Score = 118 bits (130), Expect = 1e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122 ||||| |||| |||||||| | ||||||||||| || || || || ||||| ||| Sbjct 606834 TACATCTTAGATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGCCGTGCCGGT 606775 Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182 || ||||| | ||||| || || |||| ||||| |||| |||||| |||| ||| Sbjct 606774 GCATGCTCTACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTGGATCAGTCTGATGGTTCA 606715 Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACA 164242 || || || || | ||| || | | ||| | ||||| || ||||| || |||||||| Sbjct 606714 TTTCTTGATGACGGTCAAATGGAGGAAGGCTATGTGCTAACCTGTGTGGCGTATCCAACT 606655 Query 164243 TCTGATTGTGTTGTGGTTACTGATCAAGAGGAGAATCTCTACTGA 164287 || ||||||||| | ||| | |||| | ||||||| ||| Sbjct 606654 TCAGATTGTGTTATTCATACGCACAAAGAAGGCGATCTCTATTGA 606610 >seq318 Length=400206 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 163661 TCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCA 163720 ||||| | || || || ||||| || || |||||||||| | | || | || || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 163721 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTG 163780 |||| ||||| | || | || || || ||||| ||| || ||||| ||| ||||||| Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 163781 TGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATG 163840 | | ||||||||||| || ||||||| ||| || |||||||||||||||||| Sbjct 349213 TAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATA 349272 Query 163841 AGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 163883 | |||||| | || || || || | || || ||||| | ||| Sbjct 349273 AACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 >seq1868 Length=44937 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 165285 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCG 165344 ||||| |||||||| ||||||||||| |||||||| ||||| || ||||| || |||| Sbjct 39548 GAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTT-GGGGTTGCT 39606 Query 165345 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGT 165391 ||||| || || || ||| | ||||| || ||||| ||||| || || Sbjct 39607 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 39653 >seq26 Length=132285 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 165479 AGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACT 165538 ||| |||||||| | ||||||||| |||||||||||||| || || || |||||||| | Sbjct 33083 AGCGGAAGATCCTGGATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTAT 33024 Query 165539 ACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGT 165598 ||||| ||| ||| || |||| || ||||||||| |||| ||||| || || || Sbjct 33023 TCGTGCGTGGACGGCGGCTCAAGATCTGCCTCATGAAAACCTTATGTTCCCTGAGGAGGT 32964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563016531749120