Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1210 131 3e-25 seq520 122 2e-22 >seq1210 Length=122563 Score = 131 bits (144), Expect = 3e-25 Identities = 187/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||||| ||||| || | |||||| || ||||||||||| |||||||| || | ||||| Sbjct 42545 TACATTTCAGAATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCT 42486 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCA-GATTCTCATTGACTATCCCATCTGA 48543 | || || |||||| | |||||| ||| ||| ||||||| ||| || || || || Sbjct 42485 GAGACTTGAACTTCTTTCATGAATCT-TCCTGCAAGATTCTCCAAGACGATGCCGTCGGA 42427 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 ||| |||||||||||||| || ||| | || ||||| ||| || ||| || || Sbjct 42426 AGCGGCAAAGAAGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTT 42367 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 |||| || | |||| | || |||||||| | |||||||| || || || Sbjct 42366 CCAGTGATGAAGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGC 42307 Query 48664 TTTTTTGTACATGCCCCATAT 48684 |||||||||||| |||| || Sbjct 42306 TTTTTTGTACATTTCCCAGAT 42286 >seq520 Length=294854 Score = 122 bits (134), Expect = 2e-22 Identities = 185/261 (71%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||||| ||||| || | || || || ||||||||||| ||||| ||||| | |||||| Sbjct 262384 TACATTTCAGAATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCA 262443 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGA 48543 | || || |||||| | |||||| ||| || |||||||| |||||| || || || Sbjct 262444 GAGACTTGAACTTCTTTCATGAATCT-TCCGGCAAGATTCTCCAAGACTATACCGTCGGA 262502 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || |||||||| ||||| || ||| | ||| || || ||| || ||| || || Sbjct 262503 GGCGGCAAAGAAAGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTT 262562 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 |||| | | |||| || || |||||||| | |||||||| || || || Sbjct 262563 CCAGTGAGGAAGATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGC 262622 Query 48664 TTTTTTGTACATGCCCCATAT 48684 |||||||||||| |||| || Sbjct 262623 TTTTTTGTACATTTCCCAAAT 262643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931213470556160