Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq2319 370 1e-97 seq432 343 2e-89 seq1296 154 2e-32 seq200 131 2e-25 seq2286 113 5e-20 seq814 111 2e-19 seq2312 109 6e-19 seq1196 107 2e-18 seq1868 102 8e-17 seq5156 100 3e-16 seq145 96.9 4e-15 seq2162 95.1 1e-14 seq81 91.5 2e-13 seq237 86.0 6e-12 seq318 82.4 8e-11 >seq2319 Length=57875 Score = 370 bits (410), Expect = 1e-97 Identities = 438/593 (74%), Gaps = 0/593 (0%) Strand=Plus/Minus Query 8647 CCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCT 8706 || ||||| |||||| |||| || ||| | |||| || ||||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 8707 GATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAG 8766 |||||||||||||| || ||||| ||||| ||||||| |||| |||| || ||||||||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 8767 CACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCT 8826 || || || || ||||| || || |||||| | ||||| |||||||| |||||||| || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 8827 CTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAA 8886 || || || ||||| ||||| | || |||||| || | | || || || ||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 8887 ACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTT 8946 | || ||| || | || |||| ||||||||||| || ||||| || || ||||| Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 8947 GCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGA 9006 || |||||||| || ||||| || |||||||||||||| || ||| ||||| ||| | Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 9007 AGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGC 9066 || ||||||||||| ||||| |||||||| || || |||||||||||||| | || Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 9067 GTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGA 9126 || || ||||||||||| | ||||| || || || ||||| ||| | | || Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCT 18103 Query 9127 CAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAA 9186 ||||| || || | ||||||||||| || | ||||||| || || ||||||||| Sbjct 18102 CAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 18043 Query 9187 GTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGA 9239 || ||||| ||| | ||||| || || ||||| || ||||| || || | ||| Sbjct 18042 GTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 343 bits (380), Expect = 2e-89 Identities = 396/533 (74%), Gaps = 0/533 (0%) Strand=Plus/Plus Query 10031 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAG 10090 |||||| | | |||| ||||||||||| | ||||||||||| ||| ||| || Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 10091 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATG 10150 | || || || ||| ||||||| || || ||||| || |||| ||||| || |||||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 10151 TTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTT 10210 ||||| || ||||| || || ||| || | | || ||||| ||||| ||||| || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAATCGCATTC 47669 Query 10211 TCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGT 10270 || || || |||||||||||||| ||| ||||| || |||||||| || |||||| || Sbjct 47670 TCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGGT 47729 Query 10271 TGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAG 10330 ||||||||||| || ||||| || || || || || || || ||| ||||||| |||| Sbjct 47730 TGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCAA 47789 Query 10331 GGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGA 10390 || |||||||||||||| | || || || ||||||||||||||||||||| || |||| Sbjct 47790 GGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGGC 47849 Query 10391 GGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGC 10450 | || || ||| || || || || | || |||||||| || | | | ||||||| Sbjct 47850 GCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGGG 47909 Query 10451 GAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATG 10510 || ||||| || ||| |||||| | || |||| ||||| || ||||| ||| Sbjct 47910 GATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATG 47969 Query 10511 GTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAA 10563 || || |||||||| || |||||||| || ||||| |||||||| |||||| Sbjct 47970 GTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 154 bits (170), Expect = 2e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 8701 TTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAG 8760 || || |||||||||||||| || ||||| ||||| ||||||| |||| |||| || ||| Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 8761 GCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGC 8820 |||||||| || || || ||||| || || |||||| | ||||| |||||||| |||||| Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 8821 GGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACC 8880 || || || || || ||||| ||||| | || |||||| || | | || || Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACT 75401 Query 8881 ACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAAC 8933 || |||| || ||| || | || |||| ||||||||||| || ||||| Sbjct 75400 ACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 75348 >seq200 Length=959787 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 10583 ATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCT 10642 ||| | ||||| || || | ||| | |||| | || ||||| | | ||||| || Sbjct 265389 ATGTTATTTGTCCCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCC 265330 Query 10643 CTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAA 10702 || || || ||||| || || || || |||||||| ||| | || | |||||||||||| Sbjct 265329 CTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 265270 Query 10703 TTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCA 10762 |||||||| ||||| || || ||||| || | ||||||||| ||||||| |||||||| Sbjct 265269 TTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCG 265210 Query 10763 CCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 | || || || || |||| | || | ||||| || || ||||| || Sbjct 265209 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 265160 >seq2286 Length=21248 Score = 113 bits (124), Expect = 5e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 10484 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 10543 || |||| ||||| || ||||| ||||| || |||||||| || |||||||| || ||| Sbjct 6813 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 6754 Query 10544 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 10603 || |||||||| ||||||||| ||| | |||||||||||| | ||||| || || | | Sbjct 6753 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACG 6694 Query 10604 GGTCTTTGGA 10613 ||| | |||| Sbjct 6693 GGTTTATGGA 6684 >seq814 Length=198837 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 10493 GAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCT 10552 ||||| || ||||| ||||| || |||||||| || |||||||| || ||||| ||||| Sbjct 115068 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 115127 Query 10553 TTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGG 10612 ||| ||||||||| ||| | |||||||||||| | ||||| || || | |||| | ||| Sbjct 115128 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACGGGTTTATGG 115187 Query 10613 A 10613 | Sbjct 115188 A 115188 >seq2312 Length=20438 Score = 109 bits (120), Expect = 6e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 10484 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 10543 || |||| ||||| || ||||| ||||| || |||||||| || |||||||| || ||| Sbjct 19761 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 19702 Query 10544 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 10603 || |||||||| ||||||||| ||| | |||||||||||| | ||||| || || | Sbjct 19701 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACA 19642 Query 10604 GGTCTTTGGA 10613 ||| | |||| Sbjct 19641 GGTTTATGGA 19632 >seq1196 Length=183224 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 10457 GCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACT 10516 ||||| || ||| |||||| | || |||| ||||| || ||||| ||||| || Sbjct 19745 GCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACC 19686 Query 10517 GCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCAT 10576 |||||||| || |||||||| || ||||| |||||||| ||||||| | ||| | ||| Sbjct 19685 GCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACAT 19626 Query 10577 TTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGA 10613 ||||||||| | ||||| | || | |||| | |||| Sbjct 19625 TTCTTTATGTTATTTGTCCGAGTAACGGGTTTATGGA 19589 >seq1868 Length=44937 Score = 102 bits (112), Expect = 8e-17 Identities = 93/116 (80%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 10484 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 10543 || |||| ||||| || ||||| ||||| ||||||||||| || |||||||| || || Sbjct 39539 ACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAAT-CTT 39597 Query 10544 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGT 10599 || |||||||| ||||||||| ||| | |||||||||||| | ||||| || || Sbjct 39598 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 39653 >seq5156 Length=1562 Score = 100 bits (110), Expect = 3e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 10484 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 10543 || |||| ||||| || ||||| |||| || |||||||| || |||||||| || || Sbjct 921 ACCCAAGCGGAAGAAACTTATTCAGTGGTCACCGCTAACCGCTTATGGTCCCAAATCTTC 862 Query 10544 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 10603 || |||||||| ||||||||| ||| | |||||||||||| | ||||| || | | | Sbjct 861 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAATAACG 802 Query 10604 GGTCTTTGGA 10613 ||| | |||| Sbjct 801 GGTTTATGGA 792 >seq145 Length=649883 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/175 (73%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 8574 TTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGT 8633 ||| ||||||||| | |||||||| || || | || ||||| |||||||| ||| Sbjct 132356 TTACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGATTGCTGT 132297 Query 8634 TGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTG-TCTATCCTTTTGGTC 8692 |||||| || ||||| ||| | | |||| || || ||| ||||||| |||||| Sbjct 132296 TGCATATTCAGCTCCAGTTAC------TACTGCAGTTTTTCTTAATCTATCCAATTGGTC 132243 Query 8693 AAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATAT 8747 | || || | |||||||||||||| || ||||| |||| ||||||| ||| Sbjct 132242 AGGGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACTTTAT 132188 >seq2162 Length=26882 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 10484 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 10543 || |||| || || || ||||| |||| || |||||||| || |||||||| || ||| Sbjct 20876 ACCCAAGCGGAGGAAACTTATTCATTGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 20935 Query 10544 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 10603 || |||||||| ||||||| | ||| | |||||||||||| | ||||| || || | Sbjct 20936 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACT 20995 Query 10604 GGTCTTTGGA 10613 ||| | |||| Sbjct 20996 GGTTTATGGA 21005 >seq81 Length=695010 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 10187 CGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTT-TGTCAG-TGTTTTCC 10244 || ||||| ||| | ||||| || || | || ||||||||||| | || ||| || | Sbjct 211507 CGGCCTTATAATACAATCGCATTCTCCAGTCCAATTGCTGTTTTATTTCTTCTGTATTTC 211566 Query 10245 TCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGA 10304 || |||||||| || |||||||||||||||||||| || ||||| || || | || | Sbjct 211567 ATATTTATCCACTGGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAACAGCTA 211626 Query 10305 TTTTCCGCTTCCTTCTCTT 10323 | || || ||| ||||||| Sbjct 211627 TATTTCGATTCATTCTCTT 211645 >seq237 Length=511443 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 10514 ACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTT 10573 || |||||||| || |||||||| || ||||| |||||||| ||||||||| ||| | Sbjct 122087 ACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 122028 Query 10574 CATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGA 10613 |||||||||||| | ||||| || || | ||| | |||| Sbjct 122027 CATTTCTTTATGTTATTTGTCCCGGTAACTGGTTTATGGA 121988 >seq318 Length=400206 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 9014 ATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGA 9073 || ||||| | ||||| || ||||| || || |||||||||| || | || || | Sbjct 349090 ATCTCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTA 349149 Query 9074 CCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGAC 9133 | |||||||||| | ||| | || || || ||||| ||| | | || ||||| | Sbjct 349150 CTGTGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTC 349209 Query 9134 GAGTGCTCAACACCTGGGCAGACGTACT--TAACCGCGCAGGACTCGGTATGGAAGTCAT 9191 | || | ||||| ||||| || |||| |||||| || || ||||||||||| || Sbjct 349210 GTGTAATTAACACTTGGGCTGA--TACTATTAACCGTGCTAACCTTGGTATGGAAGTTAT 349267 Query 9192 GCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGA 9239 ||| || | ||| | || || || || | || || || || | ||| Sbjct 349268 GCATAAACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516302950656000