Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1642 104 2e-17 seq1740 95.1 1e-14 seq1436 91.5 1e-13 seq933 91.5 1e-13 seq322 91.5 1e-13 seq23 86.0 5e-12 >seq1642 Length=65368 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || || ||||||||| || ||| |||| Sbjct 33995 ATGCAAATCTTTGTGAAGACGTTGACTGGAAAGACCATTACCTTAGAGGTAGAAAGTTCA 34054 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| ||||| |||||| | || ||||||| Sbjct 34055 GACACCATAGATAATGTGAAGGCAAAAATACAGGACAAGGAGGGAATCCCGCCAGATCAA 34114 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| || || |||||||| ||| | ||| | || || || ||| Sbjct 34115 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAAC 34174 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||||| || || |||||||| ||| | || || Sbjct 34175 ATTCAGAAGGAGTCTACTCTTCACCTTGTTTT 34206 >seq1740 Length=56962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||||| || |||||||||||||| || ||| ||| Sbjct 42769 ATGCAAATCTTTGTGAAGACATTGACAGGTAAAACCATTACTATTGAGGTGGAGAGCTCA 42710 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | |||| ||| || || ||||||||||| | || ||| || Sbjct 42709 GACACAATTGACAATCTGAAGGCTAAGATACAGGACAAAGAGGGTATCCCTCCAGACCAG 42650 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| || || || | |||||| | |||| | | ||||||||| Sbjct 42649 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGATGATTATAAC 42590 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || || ||||| || ||||| ||| | || || Sbjct 42589 ATCCAGAAAGAGTCAACTCTTCACCTTGTCTT 42558 >seq1436 Length=88924 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| |||| || |||||||| || |||| ||| | || Sbjct 7264 ATGCAAATCTTCGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCT 7205 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | ||| || || || ||||| ||| | || ||||| Sbjct 7204 GACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATTCCTCCTGATCAG 7145 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| || | |||||||| || || |||||||||||| | |||| | || |||||||| Sbjct 7144 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAAT 7085 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||| ||||| || || |||| | || || || || || || Sbjct 7084 ATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGGTTGCGTGGTGGAAT 7035 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| |||| || |||||||| || |||| ||| | || Sbjct 38991 ATGCAAATCTTTGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCC 38932 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | ||| || || || ||||| ||| | || ||||| Sbjct 38931 GACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCTGATCAG 38872 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| || | |||||||| || || |||||||||||| | |||| | || |||||||| Sbjct 38871 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAAT 38812 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||| || || || || | || | | || || |||||||| Sbjct 38811 ATCCAGAAAGAGTCCACGCTTCATTTAGTGCTTCGGTTGCGTGGAGGGAT 38762 >seq933 Length=173040 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || || || || || || |||||||| ||| || ||| | || Sbjct 29241 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 29300 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| ||||||||||| | || ||||| Sbjct 29301 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 29360 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || ||| | || ||| | ||| | || ||||| ||| Sbjct 29361 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 29420 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || |||||||| || || |||| | ||||| |||| || || Sbjct 29421 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAAT 29470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || | || || || || |||||| || |||| || Sbjct 30153 ATGCAAATATTTGTGAAGACCCTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 30212 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||| | || || || ||||| | ||| ||| || Sbjct 30213 GATACAATCGATAATGTGAAAGCAAAGATTCAA-GATAAGGAGGGTATTCCCCCAGACCA 30271 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||| ||||| || || || ||||| ||| | ||| |||| ||||| || Sbjct 30272 GCAGAGGCTTATTTTTGCCGGTAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACAA 30331 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||||| ||||||||||| || ||| Sbjct 30332 TATTCAGAAAGAATCTACCCTCCAC 30356 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 28541 TGATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGA 28600 ||||| || | | |||||||| || || |||||||| || || |||||||| ||| || Sbjct 29001 TGATT-TGAACAGATGCAAATTTTCGTGAAAACATTGACTGGCAAAACCATCACCCTTGA 29059 Query 28601 AACGGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGT 28660 ||| ||| || || | | | | | || || ||| ||||| || || | Sbjct 29060 GGTGGAGAGTTCTGATACCATAGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGGAT 29119 Query 28661 GCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTAT 28720 || |||||| || || ||||||||||| || ||||||||||||||| || | Sbjct 29120 TCCACCAGATCAGCAAAGGCTTATCTTTGCTGGTAAACAATTGGAAGATGGCCGCACCCT 29179 Query 28721 GGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 || ||||| ||||| ||||| || || || || ||| Sbjct 29180 TGCGGATTACAACATCCAAAAGGAGTCCACCCTTCAC 29216 >seq322 Length=397916 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || || || || ||||| ||||| || || ||| Sbjct 312302 AATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTGGAGGTTGAGAGTTC 312243 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 ||| || | | || | || || || | || || ||||||||| | || ||||| Sbjct 312242 AGATACTATCGATAATGTGAAAGCTAAGATTCAG-GATAAAGAGGGAATCCCTCCAGATC 312184 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||||| ||||||||||| || ||||| | || ||| | ||| | || ||||| | Sbjct 312183 AGCAGAGGCTTATCTTTGCAGGGAAACAGCTTGAGGATGGAAGAACCCTAGCTGATTACA 312124 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||| || || |||||||| || || ||||| | ||||| |||| || || Sbjct 312123 ACATACAGAAGGAATCTACCCTTCATTTGGTACTTAGATTGAGAGGTGGAAT 312072 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || || || || || || |||||||| ||| || ||| | || Sbjct 312757 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 312698 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| ||||||||||| | || ||||| Sbjct 312697 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 312638 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || ||| | || ||| | ||| | || ||||| ||| Sbjct 312637 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 312578 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || |||||||| || || |||| | ||||| |||| || || Sbjct 312577 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAAT 312528 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 ||||||||| || || |||||||| | || | || || ||||| || || ||||| Sbjct 333330 AAGCAAAAATTCAG-GATAAAGAGGGTATTCCTCTGGACCAGCAGAGGCTAATTTTTGCC 333272 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 ||||| || ||||||||| | ||| |||| |||||||| || || || ||||||||| Sbjct 333271 GGCAAGCAGTTGGAAGATGGTTGTACTCTGGCTGATTATAATATCCAGAAGGAATCTACT 333212 Query 28752 CTGCACATGGTATTAAG 28768 || ||| |||| || || Sbjct 333211 CTCCACCTGGTTTTGAG 333195 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 || || |||||| | ||| |||||| ||||| ||||||||||| || |||||| | || Sbjct 333544 GATAAGGAGGGAATCCCCCCAGATCAGCAGAGGCTTATCTTTGCAGGGAAACAACTTGAG 333485 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||| | ||| | || ||||||||||| ||||| ||||| ||||| || |||| || Sbjct 333484 GATGGAAGAACCCTTGCTGATTATAACATCCAAAAGGAATCCACTCTCCATTTGGTTTT 333426 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/244 (69%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 28541 TGATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGA 28600 ||||| || | | |||||||| || || |||||||| | |||||||||||| ||| || Sbjct 334106 TGATT-TGAACAGATGCAAATTTTCGTGAAAACATTGATGGGTAAAACCATCACCCTTGA 334048 Query 28601 AACGGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAG-AGGGAG 28659 |||| ||| || || | | | | | || || ||| ||||| | ||||| Sbjct 334047 GGCGGAGAGTTCTGATACCATAGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGGAT 333988 Query 28660 TGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTA 28719 | | | | ||||| || || |||||||| || || |||||||| |||||| || Sbjct 333987 TCCACCT-GATCAGCAAAGGCTTATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCC 333929 Query 28720 TGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAG 28779 | || ||||| ||||| ||||| || || || || ||| | || || | ||| |||| | Sbjct 333928 TTGCAGATTACAACATCCAAAAGGAGTCCACCCTTCACCTTGTGTTGCGGTTAAGAGGTG 333869 Query 28780 GGAT 28783 | || Sbjct 333868 GTAT 333865 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 28541 TGATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGA 28600 ||||| || | | |||||||| || || |||||||| || ||||||||||| ||| || Sbjct 312997 TGATT-TGAACAGATGCAAATTTTCGTGAAAACATTGACCGGTAAAACCATCACCCTTGA 312939 Query 28601 AACGGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGA-GGGAG 28659 ||| ||| || || | | | || | || || ||| ||||| || |||| Sbjct 312938 GGTGGAGATTTCTGATACCATAGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGGAT 312879 Query 28660 TGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTA 28719 | | | | ||||| || || ||||||||||| || |||||||| |||||| || Sbjct 312878 TCCACCT-GATCAGCAAAGGCTTATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACCC 312820 Query 28720 TGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 | || ||||| ||||| ||||| || || || || ||| Sbjct 312819 TTGCGGATTACAACATCCAAAAGGAGTCCACCCTTCAC 312782 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || || || || || || |||| || ||| || ||| | ||| Sbjct 333866 ATGCAGATATTCGTTAAGACCTTGACTGGCAAAATTATCACCCTTGAGGTTGAATCCTCA 333807 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| ||||||||||| | || ||||| Sbjct 333806 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 333747 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||||||||| || || ||| | || ||| | ||| | || ||||| ||| Sbjct 333746 CAGTGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 333687 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || |||||||| || || |||| | ||||| |||| || || Sbjct 333686 ATCCAGAAGGAATCTACCCTTCATTTGGTTCTTAGATTGAGAGGTGGAAT 333637 >seq23 Length=202804 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| |||| || |||||||| ||| || ||| | || Sbjct 5260 ATGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 5319 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | |||| || |||| || ||||| || ||| | || |||||| Sbjct 5320 GACACCATCGACAACGTCAAAGCCAAAATTCAA-GACAAGGAAGGAATTCCACCAGATCA 5378 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | || ||||| || || |||||| | |||||| ||| | |||||||| || Sbjct 5379 ACAACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTGCCGATTACAA 5438 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||| ||||||||||| || || || Sbjct 5439 CATCCAAAAAGAATCCACGCTCCA 5462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425262616953696