Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq2319 394 1e-104 seq432 288 1e-72 seq1296 167 3e-36 seq5156 104 3e-17 seq2312 104 3e-17 seq2286 104 3e-17 seq814 104 3e-17 seq1868 102 9e-17 seq145 100 3e-16 seq1196 98.7 1e-15 seq264 95.1 1e-14 seq2162 89.7 6e-13 seq96 82.4 8e-11 >seq2319 Length=57875 Score = 394 bits (436), Expect = 1e-104 Identities = 443/593 (75%), Gaps = 0/593 (0%) Strand=Plus/Minus Query 161275 CCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 161334 || || || || || | |||||| ||| || |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 161335 GATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAG 161394 |||| |||||||| || ||||||||||| ||||||| ||| |||| || || || ||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 161395 CACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCT 161454 || || ||||| ||||| || || || ||| | || ||||| ||||| || ||||| || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 161455 CTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAA 161514 || |||||||| ||||||||||| |||| || ||| || | | ||||| || ||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 161515 AACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTT 161574 || || || ||| | ||||||| ||||||||||| ||||| ||||| || || || Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 161575 GCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGC 161634 ||||| || || || || || || |||| |||||||||||| ||||||||||| || Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 161635 TCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGC 161694 || | || |||||||| |||||||||||||| || || |||||||| || || | || Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 161695 GTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGT 161754 | || || ||||| ||||| | ||||| || || || ||||| || |||||||| | Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCT 18103 Query 161755 CAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAA 161814 || ||| || || ||||||||||| || || | ||||||||| ||||| |||||| Sbjct 18102 CAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 18043 Query 161815 GTGATGCACGAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 161867 || ||||| || || || ||||| || |||||||| ||||| ||||| | ||| Sbjct 18042 GTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 288 bits (318), Expect = 1e-72 Identities = 381/526 (72%), Gaps = 2/526 (0%) Strand=Plus/Plus Query 162333 CATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAA 162392 |||||| | || | || ||||||||||| | || || || || | ||| ||||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 162393 CTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATG 162452 | || || || ||||||||||| || || ||||| || || | | | |||||||| ||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 162453 CTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTT 162511 | || || |||||||| || ||| || || | | || ||||| ||||| || || || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATCGCATT 47668 Query 162512 CTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTC 162571 ||| ||||| |||||||| || ||| ||| || ||||| ||||| |||| || || Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 162572 CTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCA 162631 |||||||| ||||| || || || ||||| || || |||||| | ||||| |||| Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCA 47788 Query 162632 AGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGG 162691 |||||| ||||| ||||| |||| || ||||| |||||||| || || ||| | | || Sbjct 47789 AGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGG 47848 Query 162692 TGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGG 162751 | || | | | ||||||||||| | || || |||||||| | | |||||||| Sbjct 47849 CGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGG 47908 Query 162752 CGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGAT 162811 || ||||| || || || ||| || | || || | ||||||||| ||||| || Sbjct 47909 GGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAAT 47968 Query 162812 GGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTT 162857 ||| || || |||||||| ||||| || || || || |||||||| Sbjct 47969 GGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTT 48014 >seq1296 Length=110557 Score = 167 bits (184), Expect = 3e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 161329 TTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAA 161388 || || |||| |||||||| || ||||||||||| ||||||| ||| |||| || || Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 161389 GCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGC 161448 || ||||| || ||||| ||||| || || || ||| | || ||||| ||||| || ||| Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 161449 GGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACC 161508 || || || |||||||| ||||||||||| |||| || ||| || | | ||||| Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACT 75401 Query 161509 ACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT 161563 || ||||| || || ||| | ||||||| ||||||||||| ||||| |||| Sbjct 75400 ACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCT 75346 >seq5156 Length=1562 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 162774 GCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGG 162833 || ||| || | || || | ||||||||| ||||| |||| || || |||||||| ||| Sbjct 933 GCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAGTGGTCACCGCTAACCGCTTATGG 874 Query 162834 TCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTT 162893 || || || ||||| |||||||| || || |||||||| |||||||||||| | ||| Sbjct 873 TCCCAAATCTTCGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 814 Query 162894 GTTCCCGTCATGGGTCTCTGGA 162915 || || | | |||| | |||| Sbjct 813 GTCCCAATAACGGGTTTATGGA 792 >seq2312 Length=20438 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 162774 GCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGG 162833 || ||| || | || || | ||||||||| ||||| ||||| || || |||||||| ||| Sbjct 19773 GCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 19714 Query 162834 TCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTT 162893 || || || || || |||||||| || || |||||||| |||||||||||| | ||| Sbjct 19713 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 19654 Query 162894 GTTCCCGTCATGGGTCTCTGGA 162915 || || || | ||| | |||| Sbjct 19653 GTCCCAGTAACAGGTTTATGGA 19632 >seq2286 Length=21248 Score = 104 bits (114), Expect = 3e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 162786 ACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTC 162845 || || | ||||||||| ||||| ||||| || || |||||||| ||||| || || || Sbjct 6813 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 6754 Query 162846 GGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATG 162905 || |||||||| || || |||||||| |||||||||||| | ||||| || || | | Sbjct 6753 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACG 6694 Query 162906 GGTCTCTGGA 162915 ||| | |||| Sbjct 6693 GGTTTATGGA 6684 >seq814 Length=198837 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 162794 GGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGC 162853 ||||||||| ||||| ||||| || || |||||||| ||||| || || || || |||| Sbjct 115067 GGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGC 115126 Query 162854 TTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTG 162913 |||| || || |||||||| |||||||||||| | ||||| || || | |||| | || Sbjct 115127 TTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACGGGTTTATG 115186 Query 162914 GA 162915 || Sbjct 115187 GA 115188 >seq1868 Length=44937 Score = 102 bits (112), Expect = 9e-17 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 162774 GCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGG 162833 || ||| || | || || | ||||||||| ||||| ||||| ||||| |||||||| ||| Sbjct 39527 GCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGG 39586 Query 162834 TCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTT 162893 || || || || || |||||||| || || |||||||| |||||||||||| | ||| Sbjct 39587 TCCCAAATCTTGGGG-TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 39645 Query 162894 GTTCCCGT 162901 || || || Sbjct 39646 GTCCCAGT 39653 >seq145 Length=649883 Score = 100 bits (110), Expect = 3e-16 Identities = 125/170 (74%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 161202 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGT 161261 ||||||||||||| |||||||||| || ||| |||| ||||| ||||||||| || Sbjct 132356 TTACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGATTGCTGT 132297 Query 161262 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 161321 ||||| || ||||| || || | || ||| | ||| | ||||||| | ||||| Sbjct 132296 TGCATATTCAGCTCCAGTTACTACTGC-AGT----TTTTCTTAATCTATCCAATTGGTCA 132242 Query 161322 AGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACT 161371 || || | |||| ||||||||||| |||||| |||| ||||||| Sbjct 132241 GGGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACT 132192 >seq1196 Length=183224 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 162774 GCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGG 162833 || ||| || | || || | ||||||||| ||||| ||||| || || |||||||| ||| Sbjct 19730 GCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 19671 Query 162834 TCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTT 162893 || || || || || |||||||| || || ||||||| |||||||||||| | ||| Sbjct 19670 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTT 19611 Query 162894 GTTCCCGTCATGGGTCTCTGGA 162915 || | || | |||| | |||| Sbjct 19610 GTCCGAGTAACGGGTTTATGGA 19589 >seq264 Length=551193 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 161428 GGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACC 161487 || ||||| ||||| || ||||| || || |||||||| ||||||||||| |||| || Sbjct 291918 GGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACT 291977 Query 161488 TCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGT 161547 ||| || | | ||||| || ||||| || || ||| | ||||||| |||||| Sbjct 291978 TCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGT 292037 Query 161548 CAAGAAGAAGAGACCTACAA 161567 ||||| ||||| ||||| || Sbjct 292038 CAAGAGGAAGAAACCTAAAA 292057 >seq2162 Length=26882 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 162774 GCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGG 162833 || ||| || | || || | ||| ||||| ||||| |||| || || |||||||| ||| Sbjct 20864 GCTTTTAACCCAACCCAAGCGGAGGAAACTTATTCATTGGTCACCGCTAACCGCTTTTGG 20923 Query 162834 TCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTT 162893 || || || || || |||||||| || || ||||||| |||||||||||| | ||| Sbjct 20924 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTT 20983 Query 162894 GTTCCCGTCATGGGTCTCTGGA 162915 || || || | ||| | |||| Sbjct 20984 GTCCCAGTAACTGGTTTATGGA 21005 >seq96 Length=755957 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 |||||| | || ||||| ||| | || || || |||||| ||| ||||||||||| || Sbjct 745883 TACATCTTAGATGCAGCAGAGAATGCTGGAGTTGAACTCCCTTATTCGTGCCGTGCTGGA 745824 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || || | ||||| ||||| | || ||||| | || || || ||| || Sbjct 745823 GCATGCTCTACTTGTGCTGGAAAGATTGTTTCTGGTTCAGTGGATCAGTCCGATGGCTCG 745764 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 || |||| || | ||| | | || || | || || |||||||| ||||| || Sbjct 745763 TTTTTGGATGACAATCAACTTAAGGAAGGCTTTGTGCTTACCTGTGTTTCCTATCCAACC 745704 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGA 158565 || ||| ||||| ||| ||||||||| ||||| || ||| Sbjct 745703 GCAGACGTTGTAATTGAAACTCACAAGGAAGGAGAACTCTACTGA 745659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547559432259840