Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq2319 315 2e-81 seq219 136 1e-27 seq1296 129 2e-25 seq145 93.3 1e-14 seq318 82.4 2e-11 >seq2319 Length=57875 Score = 315 bits (348), Expect = 2e-81 Identities = 425/587 (72%), Gaps = 4/587 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| ||||| |||||||| ||||| || ||||||||||| | |||||||| Sbjct 17998 AGCTAGGTCTAGAGGGAAATTATGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTT 18057 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| || | || | ||| || | || | ||| Sbjct 18058 AGCACGGTTAATAATATCAGCCCAGGTGTTAATTACACGACCTTGAGAATCAACGACGGA 18117 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 |||||| || || |||||||| | ||| ||||||||||| ||| || | | ||||| Sbjct 18118 TTGGTTAAAATTAAATCCATTTAAATTGAAAGCCATAGTACTGATACCTAACGCGGTAAA 18177 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || ||||||||||| | ||||||||||| | | ||||| || Sbjct 18178 CCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAA 18237 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 ||||| || |||||||| | || ||||| || |||||||| || ||||||||||| || Sbjct 18238 ACTAGCGTATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGT 18297 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||| ||||| || ||| | || || | ||| ||| ||| || || ||||| || Sbjct 18298 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAGTTTCCCT 18357 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | ||||| || | |||||||||||| ||||| | || |||||||| Sbjct 18358 GATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGCCGAATAC 18417 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| | ||| || |||||||||||||| ||||| || || || || ||||| Sbjct 18418 ACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCTGAAATAC 18477 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| || ||||||||||| || || |||||||||||||| || || || || || Sbjct 18478 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTG 18537 Query 18374 TCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGG 18418 |||| || || | | ||||| |||| || | |||||||| ||||| Sbjct 18538 ACCAATTGGGTAGATCAAGAAA-ACTGCAGTA-GCAGCTGCAACTGG 18582 >seq219 Length=535087 Score = 136 bits (150), Expect = 1e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18563 GGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGAT 18622 || |||||||||||| || ||||| ||||| | ||| || || ||| | || | || Sbjct 252068 GGATGCAGCTTCCCATATCGGGTAAAAGTGCAAACCAATAGCCGCAGAAGTAGGAATAAT 252127 Query 18623 TGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACC 18682 || || || || || |||||||| || |||| | ||| || ||||||||||||||||| Sbjct 252128 GGCACCCGAAATTATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACC 252187 Query 18683 ATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAA 18742 ||| || || || ||||| ||||||| || || || | |||| | | || |||||| || Sbjct 252188 ATCAATATCTACAGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAA 252247 Query 18743 AAGTGCAGGGATCATAAGTACCCCAAACCACCC 18775 | | ||||||||| | || |||||||| || Sbjct 252248 TAAGGTAGGGATCATCAAAACACCAAACCATCC 252280 >seq1296 Length=110557 Score = 129 bits (142), Expect = 2e-25 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 18127 TATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCG 18186 || | || ||||| ||||| || ||| | || || | ||| ||| ||| || || | Sbjct 75343 TANAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAG 75402 Query 18187 TTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCAC 18246 |||| || || | ||||| || | |||||||||||| ||||| | || | Sbjct 75403 TTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGC 75462 Query 18247 CGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTT 18306 ||||||| || || ||||| | ||| || |||||||||||||| ||||| || || || | Sbjct 75463 CGAATACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCT 75522 Query 18307 GGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAA 18364 | ||||| | ||| || ||||||||||| || || |||||||||||||| || || Sbjct 75523 GAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAA 75580 >seq145 Length=649883 Score = 93.3 bits (102), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 7/175 (4%) Strand=Plus/Plus Query 18318 ATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 18377 || || |||||||||| || || |||||||||||||| | || || || || ||| Sbjct 132188 ATAAAGTTGAAAGTACTAGAGATTCCCAGAGGCATACCATCTAAAAAGCTTCCCTGACCA 132247 Query 18378 AAAGGATAAACGA-GAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACA 18436 | ||||| | | |||| |||| ||| | ||||| || ||||| |||||| Sbjct 132248 ATTGGATAGATTAAGAAAAACTG------CAGTAGTAACTGGAGCTGAATATGCAACAGC 132301 Query 18437 AATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 |||||| ||||||||||| | | | |||| |||||||| | || ||||||||| Sbjct 132302 AATCCAAGGGCGCATACCCAAACGAAAACTTAGTTCCCACTTACGACCCATGTAA 132356 >seq318 Length=400206 Score = 82.4 bits (90), Expect = 2e-11 Identities = 153/223 (69%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||| | || || ||||||| ||||| | ||||||||||| | |||||||| Sbjct 349307 AGCTAGCTCTGGAGGAAAATTATGAGTGTTACGTTTATGCATAACTTCCATACCAAGGTT 349248 Query 17894 AGCTCTGTT--GAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATG 17951 ||| | ||| |||| |||||||| || | || | ||| || | || | | Sbjct 349247 AGCACGGTTAATAGTA--TCAGCCCAAGTGTTAATTACACGACCTTGAGAATCAACGACG 349190 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 |||||||| || || |||| ||| | ||| ||||||| ||| ||| || | | || Sbjct 349189 GATTGGTTAAAATTAAATCAATTTAAATTGAAAGCCACAGTACTGATACCTAACACGATA 349130 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTA 18054 | ||| || | || || |||||||| ||||||| || || Sbjct 349129 AACCAGATACCTACTACAGGTCAAGCAGCTAAGAAGAGATATA 349087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151269121649856