Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq2319 372 9e-99 seq1296 132 1e-26 seq318 105 2e-18 >seq2319 Length=57875 Score = 372 bits (412), Expect = 9e-99 Identities = 433/584 (74%), Gaps = 0/584 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||| || || ||||| || |||||||| || || | |||||||| Sbjct 17999 GCTAGGTCTAGAGGGAAATTATGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTA 18058 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| ||| |||||||||||||| || || | || | || | | | | ||| Sbjct 18059 GCACGGTTAATAATATCAGCCCAGGTGTTAATTACACGACCTTGAGAATCAACGACGGAT 18118 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 |||||||| || || ||||| || ||||||||||| ||| | || | ||| | |||| Sbjct 18119 TGGTTAAAATTAAATCCATTTAAATTGAAAGCCATAGTACTGATACCTAACGCGGTAAAC 18178 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 || |||||||| |||||||| ||||| || |||||||| | | ||| || || || || Sbjct 18179 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAA 18238 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||| ||||||||||| | || |||||||| || |||||||| |||||||| || || Sbjct 18239 CTAGCGTATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTT 18298 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 |||||||||||||| || ||||||| | ||| || | | ||| || || || | Sbjct 18299 TCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAGTTTCCCTG 18358 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||||||||||||| ||| | || || ||||| Sbjct 18359 ATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGCCGAATACA 18418 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||| | ||||||||| ||||||||||||||||| ||||||||||| || || Sbjct 18419 CCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCTGAAATACA 18478 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | ||| ||||||| || || || || || | |||||| |||| ||||| ||||| Sbjct 18479 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGA 18538 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGG 22054 |||| || || | | ||| || ||||| ||||| || || || Sbjct 18539 CCAATTGGGTAGATCAAGAAAACTGCAGTAGCAGCTGCAACTGG 18582 >seq1296 Length=110557 Score = 132 bits (146), Expect = 1e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 21768 GTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCA 21827 || |||||||||||||| || ||||||| | ||| || | | ||| || || || Sbjct 75348 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAGTTTCC 75407 Query 21828 CGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAAT 21887 | || | || || |||| | ||||||||||||| ||| | || || ||| Sbjct 75408 CTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGCCGAAT 75467 Query 21888 ACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAAC 21947 || || || ||||| | ||||||||| ||||||||||||||||| ||||||||||| || Sbjct 75468 ACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCTGAAAT 75527 Query 21948 ACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAA 22000 || | ||| ||||||| || || || || || | |||||| |||| ||||| Sbjct 75528 ACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAA 75580 >seq318 Length=400206 Score = 105 bits (116), Expect = 2e-18 Identities = 144/200 (72%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 21483 GGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGA 21542 || || || || | ||| || | |||||| || || | |||||||| |||||||||| | Sbjct 349294 GGAAAATTATGAGTGTTACGTTTATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 349235 Query 21543 ATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTG 21602 | |||||||| ||||| || || | || | || | | | | ||||||||||| || Sbjct 349234 GTATCAGCCCAAGTGTTAATTACACGACCTTGAGAATCAACGACGGATTGGTTAAAATTA 349175 Query 21603 AAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACA 21662 || | ||| || |||||||||| ||| | || | | | |||||| |||||||| Sbjct 349174 AATCAATTTAAATTGAAAGCCACAGTACTGATACCTAACACGATAAACCAGATACCTACT 349115 Query 21663 ACAGGCCAGGCAGC-AAGAA 21681 ||||| || ||||| ||||| Sbjct 349114 ACAGGTCAAGCAGCTAAGAA 349095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146160385902720