Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2319 354 9e-93 seq1296 161 1e-34 seq432 150 2e-31 seq145 109 6e-19 seq445 107 2e-18 seq200 100 3e-16 seq219 96.9 4e-15 seq318 89.7 6e-13 >seq2319 Length=57875 Score = 354 bits (392), Expect = 9e-93 Identities = 429/584 (73%), Gaps = 0/584 (0%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| ||||| || || || || | ||||||||||||||||||||| | ||| Sbjct 17999 GCTAGGTCTAGAGGGAAATTATGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTA 18058 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | ||| | || |||| |||| || | | || | || |||||| || ||| Sbjct 18059 GCACGGTTAATAATATCAGCCCAGGTGTTAATTACACGACCTTGAGAATCAACGACGGAT 18118 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 |||||||| || || ||||| || ||||| ||||| || | |||||| | | ||| ||| Sbjct 18119 TGGTTAAAATTAAATCCATTTAAATTGAAAGCCATAGTACTGATACCTAACGCGGTAAAC 18178 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | || ||| ||||| || | ||||||||||| || | | | ||||||||||| Sbjct 18179 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAA 18238 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 ||| || |||||||| | || ||||| ||||| || || ||||| || || || ||| Sbjct 18239 CTAGCGTATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTT 18298 Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408 ||||| ||||| ||||| | ||||| | ||| || || | ||||| ||||| ||| Sbjct 18299 TCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAGTTTCCCTG 18358 Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468 || | | ||| || || | ||||| ||||| || ||||| || || ||||| | Sbjct 18359 ATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGCCGAATACA 18418 Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || ||||| ||| |||||| || |||||||| ||||| |||||||| || || || || Sbjct 18419 CCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCTGAAATACA 18478 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | |||||||||||||||||| ||||| || || ||||||||||| || || |||||| Sbjct 18479 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGA 18538 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGG 124632 |||| |||||| | ||||| || || ||||| | ||||| Sbjct 18539 CCAATTGGGTAGATCAAGAAAACTGCAGTAGCAGCTGCAACTGG 18582 >seq1296 Length=110557 Score = 161 bits (178), Expect = 1e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 124346 GTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCT 124405 |||||||| ||||| ||||| | ||||| | ||| || || | ||||| ||||| Sbjct 75348 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAGTTTCC 75407 Query 124406 CTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAAC 124465 ||||| | | ||| || || | ||||| ||||| || ||||| || || ||||| Sbjct 75408 CTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGCCGAAT 75467 Query 124466 ATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAA 124525 | || ||||| ||| |||||| || |||||||| ||||| |||||||| || || || Sbjct 75468 ACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCTGAAAT 75527 Query 124526 ACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAAT 124579 || | |||||||||||||||||| ||||| || || ||||||||||| || ||| Sbjct 75528 ACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAAT 75581 >seq432 Length=331984 Score = 150 bits (166), Expect = 2e-31 Identities = 277/406 (68%), Gaps = 0/406 (0%) Strand=Plus/Minus Query 123272 TCTTCATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCT 123331 |||||| | || || || | || || || |||||||| || |||| || || | || Sbjct 47905 TCTTCAAATAAGGTATTTTCTACGGTAGCGCCATGAATAGCGCATAATAGGGCGGCGCCC 47846 Query 123332 AGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGT 123391 | || || ||||| |||||||| |||||||| || ||||| || || || ||||| Sbjct 47845 AATACACCAGCAACTCCCATCATATGAAATGGGTTTAATGTCCAATTATGAAACCCTTGG 47786 Query 123392 ATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTG 123451 | || | || | ||||| || ||||| ||||| || ||||| |||||||||| Sbjct 47785 AAAAAGAGAATGAATCGAAATATAGCTGCTACACCAAAACTAGGTGCAAAGAACCAACCA 47726 Query 123452 TGCTGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAAT 123511 |||||| |||||||| || || || | | || || || || | | |||||| Sbjct 47725 GACTGACCCAGTGGATAAATAAGGAATACAGAAACAAAAACAGCAATTGGACCGGAGAAT 47666 Query 123512 GCGAGTGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATG 123571 |||| ||| || ||||| | | ||| || || | |||||||| | | ||| Sbjct 47665 GCGATTGCATTATAAGGCCGCAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATA 47606 Query 123572 AAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGT 123631 |||||||| | ||| || | || || | || ||||| |||| ||||| || | ||| Sbjct 47605 AAACCTATTAATCCGAAAGCACCGTGAAGAGCAACAAAAGTCCACAGACCACCTAATTGA 47546 Query 123632 AACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACA 123677 ||||||| || ||| ||||||||||| ||||| || |||| Sbjct 47545 CACCAACGGGTAAAATCTCCCTGTGCTTCAGGACCCCACAGTAACA 47500 >seq145 Length=649883 Score = 109 bits (120), Expect = 6e-19 Identities = 128/173 (74%), Gaps = 5/173 (3%) Strand=Plus/Plus Query 124532 ATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCA 124591 |||||||||||||||| ||||| || || ||||||||||| | || ||||||||| Sbjct 132188 ATAAAGTTGAAAGTACTAGAGATTCCCAGAGGCATACCATCTAAAAAGCTTCCCTGACCA 132247 Query 124592 AATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAG 124651 | ||| || | |||||| | | ||||| || ||||| |||||||| |||||| Sbjct 132248 ATTGGATAGATTAAGAAAA-----ACTGCAGTAGTAACTGGAGCTGAATATGCAACAGCA 132302 Query 124652 ATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTA 124704 |||||||| ||||| || || | | ||||||||||| | |||||||| Sbjct 132303 ATCCAAGGGCGCATACCCAAACGAAAACTTAGTTCCCACTTACGACCCATGTA 132355 >seq445 Length=326537 Score = 107 bits (118), Expect = 2e-18 Identities = 176/252 (70%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||| ||||| || ||||| || | |||||||||||| || ||||| Sbjct 228834 TGAGCAGTGCAAATGTTGCTGGTAGCCTTGTCCCTACGAATATGCTGCTCCCTGGTTTGC 228775 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | || | || | || | || || || |||| || ||| | ||||| | Sbjct 228774 ATAGCCATCCTCAAAGCTGACTTACCAGAAGAATCAACACTAAC--ACCAATGATTCTTC 228717 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 |||| ||| | ||||| |||| | || || || ||||| |||||||||||||| || | Sbjct 228716 CAGGCATCATCCTCTTGTACTCTTGTGAAGTAGCCAAGAAAGCAGCATGAGGACCACCAT 228657 Query 139495 ATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCCCACTCAC 139554 | ||||| |||| ||| || ||||| ||| ||| |||||||| ||| | |||| Sbjct 228656 AACCCATTGGAACACCGAATCTTTGAGCTGAACCGACAACAATATCAGCTCCAAATTCAC 228597 Query 139555 CTACAGGTTGCA 139566 | ||||| || Sbjct 228596 CAGGAGGTTTCA 228585 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 138158 TACAAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCC 138217 || |||||||| | ||||| ||||||||||||||| | ||||| || || ||||| Sbjct 232712 TAAAAATGGTGCCAAGTGTTTCTTTACACCAATAGGACCCATTCCAGGGCCACCTCCTCC 232653 Query 138218 ATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||| || || || |||||||| || | ||| ||||| || |||||||| ||| Sbjct 232652 ATGAGGGATGCAAAATGTCTTGTGAAGATTGAGATGGCAAACATCTGCTCCA 232601 >seq200 Length=959787 Score = 100 bits (110), Expect = 3e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 122884 TGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTGGTCAACAGATGACATCCA 122943 ||||| || || || ||||||| || || ||||| || || || || | |||||| Sbjct 265159 TGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCTTGAGCCGCCATCCA 265218 Query 122944 TGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAAAGTCTCGAACTCTGGGTC 123003 || | || ||||| || | ||||| || || || ||||||||||| || || || || Sbjct 265219 CGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATC 265278 Query 123004 TTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCTGAGGTTAAGTGCTAGACC 123063 ||| ||||| | || |||||||| || ||||| || || | ||||| || || ||||| Sbjct 265279 TTCCGCTGCGCGGATTTCTTGAGAAACGAAGTCATAGGCACGTAGGTTCAGGGCCAGACC 265338 Query 123064 TAC 123066 || Sbjct 265339 GAC 265341 >seq219 Length=535087 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 124771 ATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGG 124830 |||||| | ||| |||||||| || ||||| ||||| | || ||||| || | || Sbjct 252062 ATCAACGGATGCAGCTTCCCATATCGGGTAAAAGTGCAAACCAATAGCCGCAGAAGTAGG 252121 Query 124831 AACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCT 124890 || || ||||| || || || ||||| || || | | ||| || | || || || | Sbjct 252122 AATAATGGCACCCGAAATTATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACG 252181 Query 124891 GATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGCTG 124949 || || || ||||| |||||||| || ||||| || || | || || ||| | | || Sbjct 252182 AATACCATCAATATCTACAGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAGTTG 252240 Query 124950 CTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAA 124991 | || | |||| || ||||| | |||||||||||| |||| Sbjct 252241 CGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAA 252282 >seq318 Length=400206 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||| ||| | || || || || | || | || |||||||||||||||||| | ||| Sbjct 349306 GCTAGCTCTGGAGGAAAATTATGAGTGTTACGTTTATGCATAACTTCCATACCAAGGTTA 349247 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | ||| | | |||| |||| || | | || | || |||||| || ||| Sbjct 349246 GCACGGTTAATAGTATCAGCCCAAGTGTTAATTACACGACCTTGAGAATCAACGACGGAT 349187 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 |||||||| || || | ||| || ||||| |||| || | |||||| | | | ||| Sbjct 349186 TGGTTAAAATTAAATCAATTTAAATTGAAAGCCACAGTACTGATACCTAACACGATAAAC 349127 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGA 124262 || | || ||| ||||| || | |||| ||||| Sbjct 349126 CAGATACCTACTACAGGTCAAGCAGCTAAGAAGA 349093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578799919348480