Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2319 379 3e-100 seq432 338 8e-88 seq1296 167 3e-36 seq96 156 6e-33 seq219 132 6e-26 seq2286 111 2e-19 seq814 111 2e-19 seq134 111 2e-19 seq56 109 7e-19 seq2312 107 3e-18 seq129 105 9e-18 seq177 104 3e-17 seq5156 102 1e-16 seq2162 102 1e-16 seq1868 102 1e-16 seq1196 102 1e-16 seq318 96.9 5e-15 seq237 89.7 7e-13 seq118 86.0 8e-12 >seq2319 Length=57875 Score = 379 bits (420), Expect = 3e-100 Identities = 440/593 (74%), Gaps = 0/593 (0%) Strand=Plus/Plus Query 26725 TCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAAT 26784 ||| | ||||| || || | || |||||||| ||||| | ||| || || || || | Sbjct 17990 TCAACCGCAGCTAGGTCTAGAGGGAAATTATGAGCGTTACGTTCATGCATAACTTCCATA 18049 Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 ||||| ||||||||| | || || ||||| ||||| | |||||||| || |||||| Sbjct 18050 CCAAGGTTAGCACGGTTAATAATATCAGCCCAGGTGTTAATTACACGACCTTGAGAATCA 18109 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | || || || || || || || || || | |||||||||||| || | ||| | Sbjct 18110 ACGACGGATTGGTTAAAATTAAATCCATTTAAATTGAAAGCCATAGTACTGATACCTAAC 18169 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 ||||| |||||||| || || || ||||| ||||| |||||||| || || ||||| ||| Sbjct 18170 GCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAG 18229 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG 27024 |||||||| ||| |||||||||||||| || || || || ||||| || || || || Sbjct 18230 TTGTTGAAACTAGCGTATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATA 18289 Query 27025 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTC 27084 || ||||| ||||| ||||||||||| | ||||| | ||| || ||| |||| || Sbjct 18290 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTA 18349 Query 27085 GTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCA 27144 || || | || | ||| || |||| |||||||||||| ||| || || || Sbjct 18350 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCG 18409 Query 27145 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCC 27204 |||||||| ||||| ||||| | |||||| ||||| |||||||| ||||| || || ||| Sbjct 18410 CCGAATACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCC 18469 Query 27205 TGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAA 27264 || ||||||| ||| |||| |||||||||||||| || ||||||||| |||| || || Sbjct 18470 TGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAAG 18529 Query 27265 GAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGG 27317 || ||||| | || |||| | ||| |||||| | ||||| || ||||| Sbjct 18530 CTTCCCTGACCAATTGGGTAGATCAAGAAAACTGCAGTAGCAGCTGCAACTGG 18582 >seq432 Length=331984 Score = 338 bits (374), Expect = 8e-88 Identities = 397/534 (74%), Gaps = 2/534 (0%) Strand=Plus/Minus Query 23655 TTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAA 23714 |||||| ||| |||||||| |||||||| |||||||| || || || || ||||| ||| Sbjct 48022 TTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAA 47963 Query 23715 TAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCT 23774 || || || ||| | || || | | || || || || ||||| || |||||| Sbjct 47962 TAAGTTTCTTCCGCTTGGGTTGGGTTAAAAGCACGGAATGTATTTGCACCATCCCCATCT 47903 Query 23775 TCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGT 23834 ||| | | ||||| || || ||| | ||||||||||| | | || || | |||| | Sbjct 47902 TCAAATAAGGTATTTTCTACGGTAGCGCCATGAATAGCGCATAATAGGGCGGCGCCCAAT 47843 Query 23835 ATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGG 23894 | ||||||||||||||||||||| || ||||| | ||||| |||||||| || |||| Sbjct 47842 ACACCAGCAACTCCCATCATATGAAATGGGTTTAATGTCCAATTATGAAACCCTTGGAAA 47783 Query 23895 AAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGAC 23954 ||||||| ||| | || || || || ||||| ||||| || |||||||||||| ||| Sbjct 47782 AAGAGAATGAATCGAAATATAGCTGCTACACCAAAACTAGGTGCAAAGAACCAACCAGAC 47723 Query 23955 TGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCA 24014 || |||| ||||| || ||||||||||| || || |||||||| ||||| || || || Sbjct 47722 TGACCCAGTGGATAAATAAGGAATACAGAAACAAAAACAGCAATTGGACCGGAGAATGCG 47663 Query 24015 ATCGCATTGTAGGGACGGATTCCAATTAGA-CGTGCCAGTTCAAACTGACGTAACATAAA 24073 || ||||| || || || | | || ||| || || |||||||| |||||||||||||| Sbjct 47662 ATTGCATTATAAGGCCGCAATTGAAC-AGATCGAGCAAGTTCAAATTGACGTAACATAAA 47604 Query 24074 ACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAG 24133 |||||| | | | || |||||||| ||||||||||| | ||| || || || | ||| Sbjct 47603 ACCTATTAATCCGAAAGCACCGTGAAGAGCAACAAAAGTCCACAGACCACCTAATTGACA 47544 Query 24134 CCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATG 24187 ||| || ||| || || || | ||||||||||| |||| | | |||||| Sbjct 47543 CCAACGGGTAAAATCTCCCTGTGCTTCAGGACCCCACAGTAACAACAAAGAATG 47490 >seq1296 Length=110557 Score = 167 bits (184), Expect = 3e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 27029 AGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCT 27088 |||| ||||| ||||||||||| | ||||| | ||| || ||| |||| || || | Sbjct 75346 AGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAGTTT 75405 Query 27089 CACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGA 27148 | | || | ||| || |||| |||||||||||| ||| || || || |||| Sbjct 75406 CCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGCCGA 75465 Query 27149 ATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGA 27208 |||| ||||| ||||| | |||||| ||||| |||||||| ||||| || || ||||| | Sbjct 75466 ATACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCTGAA 75525 Query 27209 ATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAA 27263 |||||| ||| |||| |||||||||||||| || ||||||||| |||| || || Sbjct 75526 ATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAA 75580 >seq96 Length=755957 Score = 156 bits (172), Expect = 6e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 32608 TCAGTAGAGTTTCTCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAAC 32667 ||||||||||| |||| | | ||||||||||| ||| || | |||||||| | ||| Sbjct 745659 TCAGTAGAGTTCTCCTTCCTTGTGAGTTTCAATTACAACGTCTGCGGTTGGATAGGAAAC 745718 Query 32668 ACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTG 32727 ||| || |||||||| ||||| | || ||||| |||||||| ||||| ||| || Sbjct 745719 ACAGGTAAGCACAAAGCCTTCCTTAAGTTGATTGTCATCCAAAAACGAGCCATCGGACTG 745778 Query 32728 GTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGA 32787 || |||| |||||| |||||||| || ||||||| || || || || ||||| || || Sbjct 745779 ATCCACTGAACCAGAAACAATCTTTCCAGCACAAGTAGAGCATGCTCCAGCACGGCACGA 745838 Query 32788 GTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAG 32843 || | ||||| ||| | | |||||||||||| | |||||| |||||||| Sbjct 745839 ATAAGGGAGTTCAACTCCAGCATTCTCTGCTGCATCTAAGATGTAAACATCATCAG 745894 >seq219 Length=535087 Score = 132 bits (146), Expect = 6e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 27463 GATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACT 27522 ||||| |||||||| || ||||| ||||| | ||| || || ||| | || | || Sbjct 252069 GATGCAGCTTCCCATATCGGGTAAAAGTGCAAACCAATAGCCGCAGAAGTAGGAATAATG 252128 Query 27523 GCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCG 27582 ||||| ||||| || ||||| || || | || || |||| ||| || ||||||||||| Sbjct 252129 GCACCCGAAATTATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACCA 252188 Query 27583 TCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGCTGCTAA 27641 |||||||| || || || || || ||||| |||| ||| || |||| |||||| | || Sbjct 252189 TCAATATCTACAGGAGGGGCAGCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAA 252247 Query 27642 CAGTGTTGGGATCATCAGTACACCGAACCAACCAA 27676 | || |||||||||| ||||| ||||| |||| Sbjct 252248 TAAGGTAGGGATCATCAAAACACCAAACCATCCAA 252282 >seq2286 Length=21248 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23606 CCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAA 23665 ||| | |||| | || || ||||| ||||||||||| || |||||||| |||||| ||| Sbjct 6685 CCATAAACCCGTTACTGGGACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAA 6744 Query 23666 CGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTC 23725 |||||||| |||||||| |||||||| || || || || ||||| ||||| || || || Sbjct 6745 AGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTC 6804 Query 23726 CTCCTGAGT 23734 | | || || Sbjct 6805 CGCTTGGGT 6813 >seq814 Length=198837 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 23606 CCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAA 23665 ||| | |||| | || || ||||| ||||||||||| || |||||||| |||||| ||| Sbjct 115187 CCATAAACCCGTTACTGGGACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAA 115128 Query 23666 CGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTC 23725 |||||||| |||||||| |||||||| || || || || ||||| ||||| || || || Sbjct 115127 AGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTC 115068 Query 23726 C 23726 | Sbjct 115067 C 115067 >seq134 Length=619377 Score = 111 bits (122), Expect = 2e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 32608 TCAGTAGAGTTTCTCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAAC 32667 ||| ||||| | |||||| | || | ||| | | ||| ||||||||||| || || Sbjct 606610 TCAATAGAGATCGCCTTCTTTGTGCGTATGAATAACACAATCTGAAGTTGGATACGCCAC 606669 Query 32668 ACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTG 32727 ||| || |||||| | ||||| || |||||| | ||||| | || || |||| || Sbjct 606670 ACAGGTTAGCACATAGCCTTCCTCCATTTGACCGTCATCAAGAAATGAACCATCAGACTG 606729 Query 32728 GTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGA 32787 || || | |||||| |||| ||| || ||||| | || || ||||| ||||| || || Sbjct 606730 ATCCACAGAACCAGAAACAACCTTCCCAGCACAGGTAGAGCATGCACCGGCACGGCACGA 606789 Query 32788 GTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAG 32843 || | ||||| || | | |||||||||||| | |||||| ||||||| Sbjct 606790 ATATGGAAGTTCAACTCCTGCATTCTCTGCTGCATCTAAGATGTAAGTGTCATCAG 606845 >seq56 Length=960176 Score = 109 bits (120), Expect = 7e-19 Identities = 289/432 (67%), Gaps = 26/432 (6%) Strand=Plus/Minus Query 46980 ATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGG 47039 |||| || || | |||||| ||| | || | | ||||| |||||||| || |||| | Sbjct 354887 ATCAAAGCAGGTAAAACATGTGAATTCTCAGGATGGAAATTGTCATTTGGTCCGTATAAG 354828 Query 47040 TTTGTAGGCATCAAAGAGATAGCATTAAATCCA-TACTGCTGATG---GTATGCCTGACA 47095 || || |||||| || || |||| ||| | || ||| ||| || ||||| Sbjct 354827 TTAGTCGGCATCCCTGAAATTGCATC----CCACTTGTGTTGAATTCTGTAAGCTTGACA 354772 Query 47096 CATCTTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACC 47155 ||| ||||| ||||||||||| ||||| ||||| | ||||| | || || | ||| || Sbjct 354771 CATTTTGATCCCAGCAATCTTGGCAATTGCATACCATTCATTTGTCGGCTCTAAAGGGCC 354712 Query 47156 ACTCATTAGATATTCTTCCCTAATAGGTT---GTTCACATAATTTTGGATAAATGCAGGA 47212 | | | | | ||||| || |||| || || ||||| || |||||||| || Sbjct 354711 AGTGAGCAAAGCATCTTCGGGGATCGGTTGGGGTGCA---AATTTAGGGTAAATGCAAGA 354655 Query 47213 AGAACCAAGAAATAAAAGTTTCTTAACACCAAACTTACG---TGCAGAATGAATGATGTT 47269 ||||| | ||| ||||| |||||| |||| || || ||||||| ||||| || Sbjct 354654 GGAACCCAAAAACAAAAGCTTCTTAGCACC---GTTGCGATAAGCAGAATCAATGACATT 354598 Query 47270 TGATTGAATCATCAAATTATCATAG--ATGAAGTGTCCGGGATAATCCTTATTAGCACCA 47327 | || || | | | |||| ||||| | | || ||| || || ||| Sbjct 354597 GGTCTGGAT--TTGGAGGTTGATAGCAATGAAATCAGCTGGGTAAGTGTTGTTGGCATGG 354540 Query 47328 ATACCACCCACCTTTGCAGCAGCAAGATAAACGTACTCAGG-TTCATTGATTTGAAAAAA 47386 |||||||| || || || ||||| | | || |||||||| || | ||| |||||| Sbjct 354539 ATACCACCAACTTTGGCTGCAGCTACAATGACATACTCAGGCTTTGTGGATGCAAAAAAA 354480 Query 47387 CCTTTCAACATC 47398 | ||||||||| Sbjct 354479 GC-TTCAACATC 354469 >seq2312 Length=20438 Score = 107 bits (118), Expect = 3e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23606 CCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAA 23665 ||| | ||| | || || ||||| ||||||||||| || |||||||| |||||| ||| Sbjct 19633 CCATAAACCTGTTACTGGGACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAA 19692 Query 23666 CGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTC 23725 |||||||| |||||||| |||||||| || || || || ||||| ||||| || || || Sbjct 19693 AGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTC 19752 Query 23726 CTCCTGAGT 23734 | | || || Sbjct 19753 CGCTTGGGT 19761 >seq129 Length=684927 Score = 105 bits (116), Expect = 9e-18 Identities = 286/430 (67%), Gaps = 22/430 (5%) Strand=Plus/Minus Query 46980 ATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGG 47039 |||| || || | |||||| ||| | || | | ||||| |||||||| || |||| | Sbjct 134345 ATCAAAGCAGGTAAAACATGTGAATTCTCAGGATGGAAATTGTCATTTGGCCCGTATAAG 134286 Query 47040 TTTGTAGGCATCAAAGAGATAGCATTAAATCCATACTGCTGATG---GTATGCCTGACAC 47096 || || |||||| || || |||| | | || || ||| ||| || |||||| Sbjct 134285 TTGGTTGGCATCCCTGAAATTGCATCCCA--CTTA-TGTTGAATTCTGTAAGCTTGACAC 134229 Query 47097 ATCTTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCA 47156 || ||||| || |||||||| ||||||||||| | ||||| | || || | || ||| Sbjct 134228 ATTTTGATCCCGGCAATCTTGGCAATAGCATACCATTCATTTGTCGGCTCTAAGGGGCCA 134169 Query 47157 CTCATTAGATATTCTTCCCTAATAGGTT---GTTCACATAATTTTGGATAAATGCAGGAA 47213 | | | | ||||| || |||| || || ||||| || |||||||| || Sbjct 134168 GTAAGCAAAGCATCTTCAGGGATCGGTTGGGGTGCA---AATTTAGGGTAAATGCAAGAG 134112 Query 47214 GAACCAAGAAATAAAAGTTTCTTAACACCAAACTTACG---TGCAGAATGAATGATGTTT 47270 ||||| | ||| ||||| |||||| |||| ||||| ||||||| ||||| || Sbjct 134111 GAACCCAAAAACAAAAGCTTCTTAGCACC---GTTACGATAAGCAGAATCAATGACATTG 134055 Query 47271 GATTGAATCATCAAATTATCATAG--ATGAAGTGTCCGGGATAATCCTTATTAGCACCAA 47328 | || || | | | |||| ||||| | | |||||| || || ||| | Sbjct 134054 GTCTGGAT--TTGGAGGTTGATAGCAATGAAATCAGCTGGATAAGTGTTGTTGGCATGGA 133997 Query 47329 TACCACCCACCTTTGCAGCAGCAAGATAAACGTACTCAGGTTCATTGATTTGAAAAAACC 47388 ||||||| || || || ||||| | | || ||||||| | || | |||||| Sbjct 133996 TACCACCAACTTTGGCTGCAGCTACAATGACAAACTCAGGCTTTGTGGATGCAAAAAAGG 133937 Query 47389 TTTCAACATC 47398 ||||||||| Sbjct 133936 CTTCAACATC 133927 >seq177 Length=575278 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||| | | ||| ||||| |||||||||| || || || ||||||||||| || || Sbjct 226914 TCTTCCTTGTGAGTCTCAATAGTAACATCAGATGTAGGGTAAGCAACACAAGTAAGAACC 226855 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 | |||||||||||||| |||||||| | ||| || ||| || | || |||| Sbjct 226854 CAACCTTCTTCAATTTGGTCATCATCAAGGAAAGAACCATCTTCCTGATTAACACCACCA 226795 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 |||| ||||| |||||||| ||||| | ||| || | || ||||| | ||| Sbjct 226794 TTAACAACTTTACCAGCACAAGAAGAACAAGAACCAGCTCTGCATGAGTAAGGAAGGTCA 226735 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAGCACA 32847 | ||| |||||| || ||||| ||||| |||||| | ||| Sbjct 226734 ATTCCAAGTTCCTCAGCATGTTCAAGAATGTAAACATCATCTGGACA 226688 >seq5156 Length=1562 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23606 CCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAA 23665 ||| | |||| | | || ||||| ||||||||||| || |||||||| |||||| ||| Sbjct 793 CCATAAACCCGTTATTGGGACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAA 852 Query 23666 CGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTC 23725 ||||||||||||||||| ||||| || || || || || |||| ||||| || || || Sbjct 853 AGCAACCCCGAAGATTTGGGACCATAAGCGGTTAGCGGTGACCACTGAATAAGTTTCTTC 912 Query 23726 CTCCTGAGT 23734 | | || || Sbjct 913 CGCTTGGGT 921 >seq2162 Length=26882 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23606 CCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAA 23665 ||| | ||| | || || ||||| ||||||||||| || ||||||| |||||| ||| Sbjct 21004 CCATAAACCAGTTACTGGGACAAATAACATAAAGAAATGTAACCAACATTTATTGGAAAA 20945 Query 23666 CGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTC 23725 |||||||| |||||||| |||||||| || || || || |||| ||||| || ||||| Sbjct 20944 AGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTGACCAATGAATAAGTTTCCTC 20885 Query 23726 CTCCTGAGT 23734 | | || || Sbjct 20884 CGCTTGGGT 20876 >seq1868 Length=44937 Score = 102 bits (112), Expect = 1e-16 Identities = 93/116 (80%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 23619 ACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAG 23678 || || ||||| ||||||||||| || |||||||| |||||| ||| |||||||| ||| Sbjct 39653 ACTGGGACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCC-AAG 39595 Query 23679 ATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGT 23734 ||||| |||||||| || || || || ||||| ||||| || || ||| | || || Sbjct 39594 ATTTGGGACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCCGCTTGGGT 39539 >seq1196 Length=183224 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23606 CCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAA 23665 ||| | |||| | || | ||||| ||||||||||| || ||||||| |||||| ||| Sbjct 19590 CCATAAACCCGTTACTCGGACAAATAACATAAAGAAATGTAACCAACATTTATTGGAAAA 19649 Query 23666 CGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTC 23725 |||||||| |||||||| |||||||| || || || || ||||| ||||| || || || Sbjct 19650 AGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTC 19709 Query 23726 CTCCTGAGT 23734 | | || || Sbjct 19710 CGCTTGGGT 19718 >seq318 Length=400206 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 26725 TCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAAT 26784 ||| | ||||| || || ||||||||||| | ||| | || || || || || | Sbjct 349315 TCAACCGCAGCTAGCTCTGGAGGAAAATTATGAGTGTTACGTTTATGCATAACTTCCATA 349256 Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 ||||| ||||||||| | | || ||||||||||| | |||||||| || |||||| Sbjct 349255 CCAAGGTTAGCACGGTTAATAGTATCAGCCCAAGTGTTAATTACACGACCTTGAGAATCA 349196 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | || || || || || || || | || | ||||||||||| || | ||| | Sbjct 349195 ACGACGGATTGGTTAAAATTAAATCAATTTAAATTGAAAGCCACAGTACTGATACCTAAC 349136 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGA 26947 || | |||||||| || || || || || ||||| | ||||| Sbjct 349135 ACGATAAACCAGATACCTACTACAGGTCAAGCAGCTAAGAAGA 349093 >seq237 Length=511443 Score = 89.7 bits (98), Expect = 7e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 23606 CCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAA 23665 ||| | ||| | || || ||||| ||||||||||| || |||||||| |||||| ||| Sbjct 121989 CCATAAACCAGTTACCGGGACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAA 122048 Query 23666 CGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGT 23704 |||||||| |||||||| |||||||| || || || || Sbjct 122049 AGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGT 122087 >seq118 Length=706494 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 23606 CCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAA 23665 ||| | ||| | || || ||||| ||||||||||| || |||||||| |||||| ||| Sbjct 215213 CCATAAACCAGTTACTGGGACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAA 215272 Query 23666 CGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCT 23702 ||||||| |||||||| |||||||| || ||| || Sbjct 215273 AGCAACCCTAAAGATTTGGGACCAAAAGCGGTTTTCT 215309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665266268519680