Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq662 118 1e-21 seq22 111 2e-19 seq31 107 2e-18 seq309 87.8 2e-12 >seq662 Length=244491 Score = 118 bits (130), Expect = 1e-21 Identities = 272/406 (67%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| ||| | || | |||||| | || || ||| | || || ||||| || Sbjct 188377 TGATGTTGCTGGGGTAGATGAAGCCAAACAGGATTTTATGGAGGTAGTCGAGTTTCTGAA 188436 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | |||||||| | || | || || || || ||| | ||||||| || Sbjct 188437 AAAGCCCGAGAGGTTCACTGCTATCGGGGCTCGCATACCAAAAGGAGTTCTTCTCGTTGG 188496 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 | ||||| || || ||||| || | ||| || || ||||||||| || |||||| Sbjct 188497 TCCCCCAGGGACTGGTAAGACGCTATTAGCCAAGGCTATTGCGGGTGAAGCAGGTGTCCC 188556 Query 175371 ATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAA 175429 || || || | ||||| | | ||||| ||||||||||| ||||| ||||| Sbjct 188557 GTTTTTCTCAAT-CTCTGGTTCTGAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCTTCTC 188615 Query 175430 GGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATG 175489 | ||||| ||| | || | | ||| || ||| || |||||||| || |||||| Sbjct 188616 GAGTTCGTGATTTATTCAAGAAAGCCAAAGAGAATGCTCCTTGTATTGTTTTTGTTGATG 188675 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGA 175546 | |||||||| ||||| | |||||| || |||| |||| || || || || | Sbjct 188676 AAATTGATGCTGTGGGAAGGCAACGAGGCACTGGAATTGGT---GGAGGGAACGATGAAA 188732 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA 175592 ||||||| || | || ||||| | || || |||||||| ||||| Sbjct 188733 GAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGATTTGA 188778 >seq22 Length=166781 Score = 111 bits (122), Expect = 2e-19 Identities = 259/384 (67%), Gaps = 19/384 (5%) Strand=Plus/Plus Query 177590 CCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAA 177649 ||||||| |||||||| |||||||| | |||||||||||||| | |||||| ||||||| Sbjct 81356 CCGTCGCTACAACATAATCATCAGCTTTCTCTTGTTGAAGCATTAACCACATCGCTTCAA 81415 Query 177650 CATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAACT 177709 |||| || ||| ||||| ||||| | ||| | ||||| || || ||| || Sbjct 81416 CATAATCACCAGCAAATCCCCAATCTCTTGAAGCTTGAAGGTTTCCAAGGAAAAG---CT 81472 Query 177710 --CTCTCTCA-CCTTTCACAATTTGTTTGACGCCATCAGTAATCTTCTTTGTGACAAAGT 177766 |||| | | || || ||| | || || |||||| || | || || || | Sbjct 81473 TACTCTGTAATCCAATCTTGATTCTTCCAACAGCACGAGTAATTTTTCTCGTTACGAAAT 81532 Query 177767 CGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCAT 177826 |||||| | |||||||| || |||||||| |||||| || || | || |||| Sbjct 81533 TCTCACCTCTGCGAGGTGATTCATGATTGAAGAGAATTCCGTTACAAGCGAAAATTCCAT 81592 Query 177827 AGGATTCTCGGTAATTTTTGACGAG----CCAGTGAGCGGCCAATTTGGAGACGCCATAG 177882 | | ||| |||||| || || || ||| || || || | |||||| || | || Sbjct 81593 ACGCTTCACGGTAA---TTCAC-AGTATACCAATGCGCAGCGACTTTGGATGCGGCGTAA 81648 Query 177883 ACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTA-CCAAA 177941 || || || | || |||||| |||| |||||| | | ||| || | ||||| Sbjct 81649 GGTGAACGAGGATGAAACGGTGTCGTTTCAGATTGTGGCGGT----GGAGTTGATCCAAA 81704 Query 177942 CATCTCCGAAGTTGAGGCTTGGTA 177965 ||| || |||| | ||||| || Sbjct 81705 CATTTCAGAAGATCCAGCTTGATA 81728 >seq31 Length=1468034 Score = 107 bits (118), Expect = 2e-18 Identities = 227/336 (68%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || |||||||| || || || ||| || || || ||| |||| || |||||| Sbjct 1355498 CCTGGGACAGGAAAGACACTACTAGCAAAAGCAATTGCAGGAGAAGCAAAAGTTCCATTC 1355557 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | | || | || | || | ||||||||||||||||| ||||| ||| || Sbjct 1355558 TTTTCATTATCAGGTTCAGAATTCATTGAGATGTTTGTTGGTGTTGGTGCTTCAAGAGTA 1355617 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | ||| | ||| | | || |||||| ||| ||| | | || |||||||||||| Sbjct 1355618 AGAGATTTGTTTAATAAGGCGAAAGAAAATTCACCGTGTTTGATATTTATTGATGAGATT 1355677 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTAT---GCCAGCAAATGACGAGAGAGAA 175551 ||||| || || ||| || || | | ||||| || |||||| || |||||| Sbjct 1355678 GATGCTGTTGG-AAG--ACAGAGAGGTACAGGTATTGGTGGAGGAAATGATGAAAGAGAA 1355734 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611 |||||| | ||||| | | || || |||||||| ||| | | ||||| || | Sbjct 1355735 CAAACATTGAATCAGTTGTTGACTGAAATGGATGGTTTTAGTGGTAATACTGGTGTTATT 1355794 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 |||||||| || |||||| | || || |||||| Sbjct 1355795 GTTATTGCTGCTACTAATAGACCTGAAATTCTTGAT 1355830 >seq309 Length=414593 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/203 (70%), Gaps = 16/203 (8%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 |||||||| ||||||||||||| ||||| |||||| | ||| | ||||| | || Sbjct 387018 TTTGTGGAATTGTTTGTTGGTGTTGGTGCTTCTAGGGTTAGGGATTTGTTTGAGAAGGC- 386960 Query 175456 CGCGAAAATCAA-----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGC 175510 ||| || | || || ||||| || |||||||| |||||||| || || | | Sbjct 386959 ----AAAGTCGAAGGCGCCTTGCATTGTGTTTATTGATGAAATTGATGCTGTTGGGAGAC 386904 Query 175511 AACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAAC 175567 | | | ||||| |||| | ||||| ||||| ||||| ||||||||||| | Sbjct 386903 AGAGGGGTGCTGGACTTGGTGGT---GGGAATGATGAGAGGGAACAGACAATTAATCAGC 386847 Query 175568 TACTCACCGAGATGGATGGCTTT 175590 | | || ||||||||||| ||| Sbjct 386846 TTTTGACTGAGATGGATGGATTT 386824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596365095941120