Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq2319 370 1e-97 seq1296 188 9e-43 seq219 120 4e-22 seq264 96.9 4e-15 >seq2319 Length=57875 Score = 370 bits (410), Expect = 1e-97 Identities = 437/587 (74%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||| || || || || | ||||||||||||||||||||| | ||| Sbjct 17999 GCTAGGTCTAGAGGGAAATTATGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTA 18058 Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008 || | ||| ||||| ||| |||| || ||| | ||| | | |||||| || | Sbjct 18059 GCACGGTTAATAATA--TCAGCCCAGGTGTTAATTACACGACCTTGAGAATCAACGACGG 18116 Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTA 8068 |||||||||| |||||||| || | || || ||||| || | ||||| | | || | Sbjct 18117 ATTGGTTAAAATTAAATCCATTTAAATTGAAAGCCATAGTACTGATACCTAACGCGGTAA 18176 Query 8069 ACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-A 8127 |||| | || ||| || || | | ||| |||||||| || | | | | |||||| | Sbjct 18177 ACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGA 18236 Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAG 8187 ||| | || || |||||||| |||| ||||| || ||||||||||| |||||||||||| Sbjct 18237 AACTA-GCGTATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAG 18295 Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCT 8247 || ||||| |||||||| || | ||||| | ||| ||| || | ||| || || || Sbjct 18296 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAGTTTCC 18355 Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 ||||| | | ||| || || || |||||||||||||||||||| || || || ||||| Sbjct 18356 CTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGCCGAAT 18415 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 | ||| ||||| ||| ||| || || |||||||||||||| |||||||| || || ||| Sbjct 18416 ACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCTGAAAT 18475 Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427 || | ||| ||||| || |||||||| || ||||||||||| ||||| || || ||| Sbjct 18476 ACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAAGCTTCCC 18535 Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474 ||||||| ||| || | ||||| ||||| |||||| | ||||| Sbjct 18536 TGACCAATTGGGTAGATCAAGAAAACTGCAGTAGCAGCTGCAACTGG 18582 >seq1296 Length=110557 Score = 188 bits (208), Expect = 9e-43 Identities = 185/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 8183 TATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTG 8242 || |||| ||||| |||||||| || | ||||| | ||| ||| || | ||| || | Sbjct 75343 TANAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAG 75402 Query 8243 TCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCAC 8302 | || ||||| | | ||| || || || |||||||||||||||||||| || || || | Sbjct 75403 TTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGC 75462 Query 8303 CGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTT 8362 |||| | ||| ||||| ||| ||| || || |||||||||||||| |||||||| || | Sbjct 75463 CGAATACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCT 75522 Query 8363 GGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAAT 8421 | ||||| | ||| ||||| || |||||||| || ||||||||||| ||||| || ||| Sbjct 75523 GAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAAT 75581 >seq219 Length=535087 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 8623 GCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCA 8682 ||||||||||| || || || ||||| || |||||||| |||| |||| | ||| Sbjct 252072 GCAGCTTCCCATATCGGGTAAAAGTGCAAACCAATAGCCGCAGAAGTAGGAATAATGGCA 252131 Query 8683 CCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCG 8742 || || || || |||||||| || | | || || | |||||| ||||||||||| || Sbjct 252132 CCCGAAATTATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCA 252191 Query 8743 ATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAG 8802 ||||| ||||| || |||||||| || || | ||||| || || || | || ||| Sbjct 252192 ATATCTACAGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAG 252251 Query 8803 CAAGGAATCATTAGAACTCCAAACCAACC 8831 ||| ||||| | ||| |||||||| || Sbjct 252252 GTAGGGATCATCAAAACACCAAACCATCC 252280 >seq264 Length=551193 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 8182 TTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTT 8241 || ||||| ||||| |||||||| || | ||||| | ||| ||| || | ||| || Sbjct 292057 TTTTAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTA 291998 Query 8242 GTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCA 8301 || || ||||| | | ||| || || || |||||||||||||||||||| || || || Sbjct 291997 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCG 291938 Query 8302 CCGAACATACCTGCTACCCCT 8322 ||||| | ||| ||||| ||| Sbjct 291937 CCGAATACACCAGCTACACCT 291917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615651282369280