Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq2319 345 1e-90 seq1296 141 3e-29 seq219 134 4e-27 seq318 95.1 3e-15 >seq2319 Length=57875 Score = 345 bits (382), Expect = 1e-90 Identities = 429/585 (73%), Gaps = 2/585 (0%) Strand=Plus/Minus Query 42688 CCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCA 42747 || || || || || |||||||| ||| | |||| ||| |||| || || |||||| Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 42748 GATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAA 42807 ||||| |||||||| || || || ||||| |||||||| ||| | || || |||||||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 42808 CATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCG 42867 ||||| |||||||||||||| || || ||| | ||||| || || ||||| || || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 42868 TTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAA 42927 | ||| |||||||| ||| | || || ||| | | | | ||||| || ||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 42928 AACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTT 42987 || ||| ||| | || |||| |||||||||||||| || || ||||| ||||| Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 42988 GCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCG 43046 || || |||||||| ||||| || | ||||||||||| || | |||| || || ||| Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGC-TAGTTTCAACAACTCTCG 18224 Query 43047 CTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGG 43106 ||||| || ||||| || || |||||||| || || || || ||||| || | | || Sbjct 18223 TTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGG 18164 Query 43107 CGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAA 43166 ||||||||||||| || || || ||||| ||||| ||||||||||| | |||||| Sbjct 18163 TATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTC 18104 Query 43167 TCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGA 43226 ||| || ||| || || |||||||||||| | || ||||| |||||||| | || Sbjct 18103 TCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 18044 Query 43227 GGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 || ||||| || || || || ||||| ||||| || || || || Sbjct 18043 AGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGC 17999 >seq1296 Length=110557 Score = 141 bits (156), Expect = 3e-29 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 42742 TTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAG 42801 ||||||||||| |||||||| || || || ||||| |||||||| ||| | || || ||| Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 42802 GCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGT 42861 ||||| ||||| |||||||||||||| || || ||| | ||||| || || ||||| || Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 42862 GGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACG 42921 || || | ||| |||||||| ||| | || || ||| | | | | ||||| Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACT 75401 Query 42922 ACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATA 42979 || ||||| ||| ||| | || |||| |||||||||||||| || || | || Sbjct 75400 ACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTNTA 75343 >seq219 Length=535087 Score = 134 bits (148), Expect = 4e-27 Identities = 159/210 (76%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 42329 TTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTAT 42386 |||| ||||||||||| ||||||| |||| || | | | || || | ||| ||||| Sbjct 252282 TTGGATGGTTTGGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTAT 252225 Query 42387 TGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGG 42446 | |||||||||||||||||||||| ||||| |||||||| |||||||| ||||| ||||| Sbjct 252224 TATCGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGG 252165 Query 42447 CTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAAT 42506 ||||| || || || ||||| || || || |||||| | | |||| | || || Sbjct 252164 ATCTCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTAT 252105 Query 42507 TGGACTACATTTGTATTCGATCTGGGAAGC 42536 ||| | || || || |||| |||||||| Sbjct 252104 TGGTTTGCACTTTTACCCGATATGGGAAGC 252075 >seq318 Length=400206 Score = 95.1 bits (104), Expect = 3e-15 Identities = 144/201 (72%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 43061 TTCTT-GCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTT-GGCGTCAGTACTAT 43118 ||||| || ||||| || || || || || ||||| | | | || || |||||||| | Sbjct 349095 TTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTA-TCGTGTTAGGTATCAGTACTGT 349153 Query 43119 GGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGT 43178 ||| || || || ||| | ||||| ||||||||||| | |||||| ||| || ||| Sbjct 349154 GGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTGT 349213 Query 43179 CATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGA 43238 || ||||||||||||| | | || ||||| |||||||| | || || ||||| | Sbjct 349214 AATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATAA 349273 Query 43239 GCGGAATGCACATAACTTCCC 43259 || || | ||||| || || Sbjct 349274 ACGTAACACTCATAATTTTCC 349294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143486057108352