Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq2319 309 9e-80 seq1296 127 6e-25 seq219 118 3e-22 seq318 86.0 2e-12 >seq2319 Length=57875 Score = 309 bits (342), Expect = 9e-80 Identities = 408/566 (72%), Gaps = 0/566 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || || |||||||| ||||| || ||||||||||| | || |||||| Sbjct 17999 GCTAGGTCTAGAGGGAAATTATGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTA 18058 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| || |||| || | | ||| || || || Sbjct 18059 GCACGGTTAATAATATCAGCCCAGGTGTTAATTACACGACCTTGAGAATCAACGACGGAT 18118 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 |||||||| ||||| ||||||| || || ||||| || | |||||| | | || | | Sbjct 18119 TGGTTAAAATTAAATCCATTTAAATTGAAAGCCATAGTACTGATACCTAACGCGGTAAAC 18178 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| || |||||||| | |||||| ||| || ||| Sbjct 18179 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAA 18238 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || || || || || || |||| ||||| || || || ||||| ||||||||||| || Sbjct 18239 CTAGCGTATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTT 18298 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | |||| || | | ||||| ||||| Sbjct 18299 TCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAGTTTCCCTG 18358 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| |||||||||||| ||| || | || ||||| || Sbjct 18359 ATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGCCGAATACA 18418 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| || || || ||||| || |||||||| || || || ||||| Sbjct 18419 CCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCTGAAATACA 18478 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||||||||| |||||||||||||| || |||||||| ||||| ||| || || || Sbjct 18479 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGA 18538 Query 26417 CCGAAAGGATAAACTAAGAACACTGC 26442 || | || || | ||||| ||||| Sbjct 18539 CCAATTGGGTAGATCAAGAAAACTGC 18564 >seq1296 Length=110557 Score = 127 bits (140), Expect = 6e-25 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACA 26305 ||||| ||||| |||||||||||| ||| || | || ||||| || ||||| ||| Sbjct 75420 GAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACA 75479 Query 26306 CCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAG 26365 || ||| || || || ||||| || |||||||| || || || ||||| | ||||||| Sbjct 75480 CCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAG 75539 Query 26366 TTAAAAGTACCAGAGATACCAAGAGGCATTCCATC 26400 || |||||||||||||| || |||||||| ||||| Sbjct 75540 TTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 75574 >seq219 Length=535087 Score = 118 bits (130), Expect = 3e-22 Identities = 153/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 26610 CAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTC 26669 |||||||||| ||||||||||| || | || || || ||| | || | | || | Sbjct 252073 CAGCTTCCCATATCGGGTAAAAGTGCAAACCAATAGCCGCAGAAGTAGGAATAATGGCAC 252132 Query 26670 CTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTA 26729 | || ||||||||||||||||| | || || || ||||| |||||||| || ||||| | Sbjct 252133 CCGAAATTATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAA 252192 Query 26730 TATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAG 26788 |||||||||| || || || ||||| || | ||||| ||| | ||| || | | |||| Sbjct 252193 TATCTACAGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAG 252251 Query 26789 CAGGGTATCATAAGCACCCCGAACCATCC 26817 || ||||| | || || |||||||| Sbjct 252252 GTAGGGATCATCAAAACACCAAACCATCC 252280 >seq318 Length=400206 Score = 86.0 bits (94), Expect = 2e-12 Identities = 144/202 (71%), Gaps = 5/202 (2%) Strand=Plus/Minus Query 25889 GGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAAT 25948 ||||| ||||||| ||||| | ||||||||||| | || |||||||| ||| ||||| Sbjct 349294 GGAAAATTATGAGTGTTACGTTTATGCATAACTTCCATACCAAGGTTAGCACGG-TTAAT 349236 Query 25949 A-CATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTGGTTAAAGTT 26007 | ||||||||| || |||| || | | ||| || || || |||||||| || Sbjct 349235 AGTATCAGCCCAAGTGTTAATTACACGACCTTGAGAATCAACGACGGATTGGTTAAAATT 349176 Query 26008 AAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATG-TCAGCCATATGCCAA 26066 ||| | ||||| || || |||| || | |||||| | | | | | | ||| || || | Sbjct 349175 AAATCAATTTAAATTGAAAGCCACAGTACTGATACCTA-ACACGATAAACCAGATACCTA 349117 Query 26067 CAACCGGCCAAGTAGC-AAGAA 26087 | || || |||| ||| ||||| Sbjct 349116 CTACAGGTCAAGCAGCTAAGAA 349095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147663896110080