Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq2319 277 5e-70 seq219 105 2e-18 seq1296 98.7 3e-16 seq318 93.3 1e-14 >seq2319 Length=57875 Score = 277 bits (306), Expect = 5e-70 Identities = 415/587 (71%), Gaps = 3/587 (1%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| | | ||||| ||||||||| || || ||||||||||| || ||||| ||||||||| Sbjct 17990 TCAACCGCAGCTAGGTCTAGAGGGAAATTATGAGCGTTACGTTCATGCATAACTTCCATA 18049 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || || | | ||||| || ||||||||| || ||| || ||| | || || Sbjct 18050 CCAAGGTTAGCACGGTTAATAATATCAGCCCAGGTGTTAATTACACGACCTTGAGAATCA 18109 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 || || || |||||||| ||||| ||||| | || |||||||||||| ||||| | Sbjct 18110 ACGACGGATTGGTTAAAATTAAATCCATTTAAATTGAAAGCCATAGTACTGATACCTAAC 18169 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | ||||| ||| || || | || || ||||| | || ||||| |||| | ||| Sbjct 18170 GCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAG 18229 Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||| ||| ||||| || || | || ||||| ||||| || |||||||| || Sbjct 18230 TTGTTGAAACTAGCGTATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATA 18289 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 ||||| || || | || ||||| || | || || | ||| |||||| |||| || Sbjct 18290 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTA 18349 Query 40884 GTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 || |||| || | ||||| || | | |||||||||||| || | | || Sbjct 18350 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCG 18409 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || || || || || || || | ||| || || || ||||| ||||| || || || || Sbjct 18410 CCGAATACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCC 18469 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 || || |||| ||| |||||||| || ||| |||||||| |||||||||||| || || Sbjct 18470 TGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAAAAG 18529 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGC--TAG-AGCTGC 41107 |||||||| | ||| || | ||||| || || ||| |||||| Sbjct 18530 CTTCCCTGACCAATTGGGTAGATCAAGAAAACTGCAGTAGCAGCTGC 18576 >seq219 Length=535087 Score = 105 bits (116), Expect = 2e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 41268 GCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCA 41327 |||||||| || ||||| || || | || || || ||| | |||| | || || Sbjct 252075 GCTTCCCATATCGGGTAAAAGTGCAAACCAATAGCCGCAGAAGTAGGAATAATGGCACCC 252134 Query 41328 GATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATA 41387 || || |||||||| ||||| | || || || ||||| |||||||| || ||||| ||| Sbjct 252135 GAAATTATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAATA 252194 Query 41388 TCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGC 41446 |||||||| || || || || || ||||| || || ||| | || || || | ||| | Sbjct 252195 TCTACAGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGT 252253 Query 41447 TGGAATCATTAGCACACCAAACCAACC 41473 || ||||| | ||||||||||| || Sbjct 252254 AGGGATCATCAAAACACCAAACCATCC 252280 >seq1296 Length=110557 Score = 98.7 bits (108), Expect = 3e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 40869 GATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCA 40928 |||||| |||| || || |||| || | ||||| || | | |||||||||||| Sbjct 75387 GATTCATTTTCTGTAGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCA 75446 Query 40929 GCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGA 40988 || | | || || || || || || || || | ||| || || || ||||| ||| Sbjct 75447 CTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAACGGATGCATAAGA 75506 Query 40989 ATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGC 41048 || || || || || || || |||| ||| |||||||| || ||| |||||||| |||| Sbjct 75507 ATATTATGCTCAGCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGC 75566 Query 41049 ATACCATCAGAGAA 41062 |||||||| || || Sbjct 75567 ATACCATCTGAAAA 75580 >seq318 Length=400206 Score = 93.3 bits (102), Expect = 1e-14 Identities = 154/221 (70%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| | | ||||| ||| ||||||| || |||| |||||| | ||||| ||||||||| Sbjct 349315 TCAACCGCAGCTAGCTCTGGAGGAAAATTATGAGTGTTACGTTTATGCATAACTTCCATA 349256 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || || | | ||||| | |||||||||||| ||| || ||| | || || Sbjct 349255 CCAAGGTTAGCACGGTTAATAGTATCAGCCCAAGTGTTAATTACACGACCTTGAGAATCA 349196 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 || || || |||||||| ||||| | ||| | || ||||||| |||| ||||| | Sbjct 349195 ACGACGGATTGGTTAAAATTAAATCAATTTAAATTGAAAGCCACAGTACTGATACCTAAC 349136 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAA 40743 | ||| ||| || || | || || ||||| | ||||| Sbjct 349135 ACGATAAACCAGATACCTACTACAGGTCAAGCAGCTAAGAA 349095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143655601876416