Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq2319 354 9e-93 seq1296 159 4e-34 seq264 100 3e-16 seq318 89.7 6e-13 >seq2319 Length=57875 Score = 354 bits (392), Expect = 9e-93 Identities = 426/578 (74%), Gaps = 6/578 (1%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| | ||||| ||||| |||||||| || ||||||||||| || |||||||||||||| Sbjct 17990 TCAACCGCAGCTAGGTCTAGAGGGAAATTATGAGCGTTACGTTCATGCATAACTTCCATA 18049 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCG 67469 ||||| || | ||||| || || ||||| || ||| || || |||| | Sbjct 18050 CCAAGGTTAGCACGGTTAATAATATCAGCCCAGGTGTTAATTAC---ACGACCTTGAGAA 18106 Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||||||||||||||| || || || || || | ||||| |||||||| | ||| Sbjct 18107 TCAACGACGGATTGGTTAAAATTAAATCCATTTAAATTGAAAGCCATAGTACTGATACCT 18166 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | || || |||||||| | || ||||| | ||||| |||||||| || | | | Sbjct 18167 AACGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGA 18226 Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| || || ||||||||||| || || || || ||||||||||| ||| Sbjct 18227 GAGTTGTTGAAACTAGCGTATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACA 18286 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || || || ||||| ||||| ||||| ||||||| | ||| || || | || Sbjct 18287 ATATTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCT 18346 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 |||||||| ||||| | | |||||| || | ||||||||||||||||| || || || Sbjct 18347 GTAGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAG 18406 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || ||||||||||| ||||| || | ||| || || || |||||||| || || ||||| Sbjct 18407 CCGCCGAATACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCA 18466 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 || || || || | ||| |||| ||||||||||| || || |||||||| | || || Sbjct 18467 GCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAA 18526 Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGC 67927 || || ||||| | || |||| |||||| || || Sbjct 18527 AAGCTTCCCTGACCAATTGGGTAGATCAAGAAAACTGC 18564 >seq1296 Length=110557 Score = 159 bits (176), Expect = 4e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 67659 GTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCT 67718 || ||||| ||||| ||||| ||||||| | ||| || || | || |||||||| Sbjct 75348 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTAGTTTCC 75407 Query 67719 CTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAAT 67778 ||||| | | |||||| || | ||||||||||||||||| || || || || |||||| Sbjct 75408 CTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCGCCGAAT 75467 Query 67779 ACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAAC 67838 ||||| ||||| || | ||| || || || |||||||| || || ||||| || || || Sbjct 75468 ACACCAGCTACACCTAACATGTGAAACGGATGCATAAGAATATTATGCTCAGCCTGAAAT 75527 Query 67839 ACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCAT 67879 || | ||| |||| ||||||||||| || || |||||||| Sbjct 75528 ACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCAT 75568 >seq264 Length=551193 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 67653 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTA 67712 || || || ||||| ||||| ||||| ||||||| | ||| || || | || ||| Sbjct 292057 TTTTAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTCGCAGATTCATTTTCTGTA 291998 Query 67713 GTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCA 67772 ||||| ||||| | | |||||| || | ||||||||||||||||| || || || || Sbjct 291997 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTGAATAGGGAGCCG 291938 Query 67773 CCGAATACACCTGCTACTCC 67792 ||||||||||| ||||| || Sbjct 291937 CCGAATACACCAGCTACACC 291918 >seq318 Length=400206 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| | ||||| || || |||| || || |||| |||||| | |||||||||||||| Sbjct 349315 TCAACCGCAGCTAGCTCTGGAGGAAAATTATGAGTGTTACGTTTATGCATAACTTCCATA 349256 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCG 67469 ||||| || | ||||| | || |||||||| ||| || || |||| | Sbjct 349255 CCAAGGTTAGCACGGTTAATAGTATCAGCCCAAGTGTTAATTAC---ACGACCTTGAGAA 349199 Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||||||||||||||| || || || | || | ||||| |||| ||| | ||| Sbjct 349198 TCAACGACGGATTGGTTAAAATTAAATCAATTTAAATTGAAAGCCACAGTACTGATACCT 349139 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGA 67575 | | | |||||||| | || ||||| | ||||| | ||||| Sbjct 349138 AACACGATAAACCAGATACCTACTACAGGTCAAGCAGCTAAGAAGA 349093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566752850499840